Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J07
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   248   2e-66
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   247   3e-66
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   3.4  
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    28   4.5  
At3g21960.1 68416.m02770 receptor-like protein kinase-related co...    28   4.5  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  248 bits (607), Expect = 2e-66
 Identities = 118/151 (78%), Positives = 131/151 (86%)
 Frame = +1

Query: 40  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 219
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 220 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 399
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 400 RIHRLARYYKTKSVLPPNWKYESSTASALVA 492
           RIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  247 bits (605), Expect = 3e-66
 Identities = 118/151 (78%), Positives = 130/151 (86%)
 Frame = +1

Query: 40  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 219
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 220 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 399
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 400 RIHRLARYYKTKSVLPPNWKYESSTASALVA 492
           RIHRLARYYK    LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 18  DIIKSRQYGSYARTWQGYIPV 80
           +I+ ++ YGSY+R WQ   PV
Sbjct: 196 EIVTAQLYGSYSRRWQHITPV 216


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 24/88 (27%), Positives = 41/88 (46%)
 Frame = +1

Query: 220 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 399
           A VR    K+     K M  +  +P+   Y   +A+   K   +NRKDK +   L ++ S
Sbjct: 634 AFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINS 691

Query: 400 RIHRLARYYKTKSVLPPNWKYESSTASA 483
           +  R+    KTK      WKY+++  ++
Sbjct: 692 KFGRVKA--KTKGKKDEFWKYKTNRTTS 717


>At3g21960.1 68416.m02770 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; belongs to a family which includes
           receptor-like kinase family proteins
          Length = 262

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 61  GKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGV 195
           G+G  +S  PY + +   +   +  +K+  F  G  G+ P  I V
Sbjct: 47  GEGTFKSGSPYEKEIKQLIDFLSSFIKDYSFVHGVSGIGPDDINV 91


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 67  GISQSALPYRRSVPTWL-KLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 243
           GI+   + Y   +     K + DD+     +L K G  P  I           +  FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247

Query: 244 KKILRIMKAMGLAPDL 291
            +I  +MK+  L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,015
Number of Sequences: 28952
Number of extensions: 246946
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)