Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J06
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    27   1.5  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.3  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   8.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.3  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 70  LNRSMRSLSPSRKNGTSKLSSTIRISMNSTYNNTMVTTA 186
           +N S  +  PSR+   S  SST  ++ +S  NN + +TA
Sbjct: 128 MNSSAGATGPSRRRQVSSGSSTPSMTKSSANNNNVSSTA 166


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 103 RKNGTSKLSSTIRISMNSTYNNTMVTTA*QRRGTSALAGECVANDLNRPNV 255
           R +    L S   ++ NS Y+N  VT++     T A   +   ND +  N+
Sbjct: 351 RLDSVVPLISDSPMTPNSVYSNEGVTSSVSGNATPASVRQSTQNDFSNSNI 401


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 489 VMIVGIRTR-LKILDFIRSK*YLYKRK*NTLLSININSFNIVIQYFTFNQKS 337
           V +VGI+ + +K  + ++      K++ + LL+  I  FN+   YFTF+  S
Sbjct: 655 VGVVGIKPKNIKSSNTVKLSSQQLKKE-SVLLNCTIPEFNVSNTYFTFSSPS 705


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 224 HSPARADVP-RRCQAVVTIVLLYVLFIEIRIVLDNLLV 114
           H+ +  D+  R  QA+V++   YVL  E + VL + LV
Sbjct: 541 HNSSNGDLQLRSIQAIVSLTFYYVLLPEFKSVLYDGLV 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,493
Number of Sequences: 5004
Number of extensions: 48768
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)