Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J06
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     28   4.8  
04_04_0263 + 24030132-24030539,24031575-24031586,24032023-240322...    27   8.5  

>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 286 YEFRVKSTCVRRSADLGH*QRTPRLERTCLAAVRPWLP 173
           Y++R   + + R   L    RTP L R CL+A+  +LP
Sbjct: 167 YKWRCVGSLIGRHHLLQEPTRTPELLRRCLSAINGFLP 204


>04_04_0263 +
           24030132-24030539,24031575-24031586,24032023-24032267,
           24032380-24032900,24033387-24033877
          Length = 558

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/53 (18%), Positives = 25/53 (47%)
 Frame = +1

Query: 7   WCCGALGGSGLTRHRAFGTDRLNRSMRSLSPSRKNGTSKLSSTIRISMNSTYN 165
           WCC    G+G    + FG +   + + +++   +N  + +  ++R  +  + N
Sbjct: 164 WCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKN 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,981
Number of Sequences: 37544
Number of extensions: 304689
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)