Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J06
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                30   1.2  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_43089| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   2.8  
SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  

>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +1

Query: 49  RAFGTDRLNRSMRSLSPSRKNGTSKLSSTIRISMNSTYNNTMVTTA*QRRGTSALAGECV 228
           R  G+ R N S+R+    R +G+ + S  +R S  S  N+  V  A    G S +AGECV
Sbjct: 416 RNSGSVRNNGSVRNSGGVRYSGSVRNSGVVRNS-GSVRNSRGVRIA----GVSVIAGECV 470

Query: 229 AN 234
            N
Sbjct: 471 RN 472


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
 Frame = +1

Query: 58   GTDRLNRSMRSLS--PSRK-NGTSKLSSTIRISMNSTYNNTMVTTA 186
            G+  +  SM S+S  P+R  NGTS +++T+ ++  S  + TM+T+A
Sbjct: 1013 GSINITWSMSSISASPNRTLNGTSIVNNTMYMNATSVQSETMITSA 1058


>SB_43089| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 305

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 28/42 (66%)
 Frame = +1

Query: 46  HRAFGTDRLNRSMRSLSPSRKNGTSKLSSTIRISMNSTYNNT 171
           +R   ++RLN S R  + +R N +++L+++ R++ N+  NN+
Sbjct: 190 NRLNNSNRLNNSNRLNNSNRLNNSNRLNNSNRLNNNNGLNNS 231



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +1

Query: 46  HRAFGTDRLNRSMRSLSPSRKNGTSKLSSTIRISMNSTYNNT 171
           +R   ++RLN S R  + +R N +++L+++ R++ ++  NN+
Sbjct: 178 NRLNNSNRLNNSNRLNNSNRLNNSNRLNNSNRLNNSNRLNNS 219



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 46  HRAFGTDRLNRSMRSLSPSRKNGTSKLSSTIRI-SMNSTYNNTMVTTA*QRRGTSALAGE 222
           +R   ++RLN S R  + +R N +++L+++ R+ + N   NN  +  + +   ++ L   
Sbjct: 184 NRLNNSNRLNNSNRLNNSNRLNNSNRLNNSNRLNNSNRLNNNNGLNNSNRLNNSNRLNNN 243

Query: 223 CVANDLNRPN 252
              N+ NR N
Sbjct: 244 NGLNNSNRLN 253


>SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 163 CTCYSSKFELCLITYLFRFSG*EIRIALICS 71
           C   SSKF LC+   L  F+  E RI + CS
Sbjct: 214 CVSCSSKFPLCMFKVLEWFNPVESRICIDCS 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,438
Number of Sequences: 59808
Number of extensions: 368140
Number of successful extensions: 4175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4170
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)