Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J06
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ...    29   3.1  
At3g23080.1 68416.m02909 expressed protein weak similarity to SP...    27   7.1  
At2g31100.1 68415.m03798 lipase, putative similar to lipase [Dia...    27   7.1  
At5g01560.1 68418.m00071 lectin protein kinase, putative similar...    27   9.4  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   9.4  

>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 427

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  LNRSMRSLSPSRKNGTSKLSSTI 138
           ++R MRSL+PS + GT + S T+
Sbjct: 405 IDREMRSLTPSMRGGTGRSSETL 427


>At3g23080.1 68416.m02909 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 419

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43  RHRAFGT-DRLNRSMRSLSPSRKNGTSKLSSTIRISMNSTYNNTMVTTA 186
           RH  +G   +LN  +R+   +RK GTS   S    S+ +  N  +V T+
Sbjct: 312 RHGMWGAVKKLNSGLRAYQSARKPGTSLSRSAQMASITTKLNMDLVETS 360


>At2g31100.1 68415.m03798 lipase, putative similar to lipase
           [Dianthus caryophyllus] GI:4103627; contains Pfam
           profile PF01764: Lipase (class 3)
          Length = 355

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 267 DLTRNSYPPRTPHPARSICINVFSF 341
           D   N +P  TP    S+C+ VF+F
Sbjct: 176 DFLHNEWPKITPSLQHSLCVTVFAF 200


>At5g01560.1 68418.m00071 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 691

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = -3

Query: 125 NLLVPFFRLGDKDRIDLFSRSVPK 54
           NL V   RLG K RI L SR VPK
Sbjct: 216 NLTVYPTRLGYKPRIPLISREVPK 239


>At2g45540.1 68415.m05663 WD-40 repeat family protein /
           beige-related contains Pfam PF02138: Beige/BEACH domain;
           contains Pfam PF00400: WD domain, G-beta repeat (3
           copies)
          Length = 2946

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 157 CYSSKFELCLITYLFRFSG*EIRIALICSVGLSQKLCVSL 38
           C S K    L   LFR    +++I  +C+ GL +KL  SL
Sbjct: 780 CQSQKINHVLKVQLFRTLLLDLKIWSLCNYGLQKKLLSSL 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,636,612
Number of Sequences: 28952
Number of extensions: 246772
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)