Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J05
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 32 0.073
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 30 0.22
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.52
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro... 28 1.2
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 2.1
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 2.1
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 3.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 3.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 4.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 4.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 6.3
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 6.3
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.4
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 8.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 8.4
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.9 bits (69), Expect = 0.073
Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Frame = +1
Query: 160 NTANKASVDP-KPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQ 336
NT K ++ P K +E + EVP P SE
Sbjct: 731 NTDAKTNLLPEKTFNEEAVKQKETEKEVPPTGPKASEIKDSVSSNNAVPSSTFNFVSPFA 790
Query: 337 TIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLP----EGKPSEEKNYKAS 480
+ KTN N + T NATK +T D P G +E+ N KAS
Sbjct: 791 AVSEKTNENNIPNDTTKTNGNATKRTLEQTEDAKPFAFSFGSTTEQANKKAS 842
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Frame = +1
Query: 145 KPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNS 324
+P + +TA+ ++ P + ++ + +N PTQSEN NS
Sbjct: 320 EPPLLSTAHHSAYRPSKNIHSMFQHFNSMKKNKNNSPTQSENVSASASSGSSPTVSRANS 379
Query: 325 --PTNQTIPAKTNSNTTNSIVT-DPKSNATKTEDNKTGD 432
+ P K + +++ K K E NKT D
Sbjct: 380 VIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTED 418
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 29.1 bits (62), Expect = 0.52
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +1
Query: 217 ASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKS 396
A R+LSE P PT + + TN T T S+++ + + S
Sbjct: 474 AKRSLSEKPKTAPTGKQLALHPLRRETSILDSTNTTSTNATNTTTTTSSSSTASSSASAS 533
Query: 397 NATKTEDNKTGD 432
++T GD
Sbjct: 534 SSTSATSGAAGD 545
>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +1
Query: 217 ASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKS 396
A N +E+ + +++N TNQT+P N +N + +D
Sbjct: 2 AINNENELEYKLIKKNKNPKISNSKKKNSTRPALQDKTNQTLPIHQNQAFSNILPSD--F 59
Query: 397 NATKTEDNKTGDKLP 441
+ KT + KT D P
Sbjct: 60 SIIKTPETKTADDFP 74
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.1
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 145 KPAVENTANKASVDPKPQTKEVLDA-SRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXN 321
K V N+AN S P T + D N ++P P++ E N
Sbjct: 369 KEDVTNSAN--STAPSTGTTVLDDGLDNNYEDIPLYGPSKDEELIKKEELEADTDLGLIN 426
Query: 322 -SPTNQ--TIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDK 435
S NQ +P + + T+N + T T DNK +K
Sbjct: 427 TSEINQPANLPDEPTAETSNPVSATTVEAVTTTADNKDEEK 467
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/108 (18%), Positives = 39/108 (36%)
Frame = +1
Query: 145 KPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNS 324
KP +T K P + + L AS ++ + S S
Sbjct: 344 KPIKFDTPEKKFTFTNPLSSKKLPASSDVKPPSAAAVGFSFGTTTNPFSFAAPKSSFPTS 403
Query: 325 PTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKN 468
T ++ A+ + T+N ++ + ++ ++ D L GK E+N
Sbjct: 404 STPASVGAEKSEETSNGNKSEQEEKENGNDETRSNDSLVSGKGKGEEN 451
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 163 TANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSE 267
T+ ASVDPK +V DA ++ PS P + E
Sbjct: 228 TSVSASVDPKSAASKVQDAEFSIQTAPS-FPKEKE 261
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 49 IFHP*FKMKRVIFICLLSLSACLSDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRN 228
I +P M + F LL L LS ++P D A++N + P T V ++ +
Sbjct: 223 IKNPYDNMAKKRFEILLQLKNVLSSSALPYDQLLAIKNQLAQLEKPASPSTSSVATSAPS 282
Query: 229 LSEVPSNV 252
+ S++
Sbjct: 283 VPSALSSI 290
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.8
Identities = 25/106 (23%), Positives = 35/106 (33%)
Frame = +1
Query: 142 GKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXN 321
GKPA NK + TK N PT S
Sbjct: 301 GKPATTEDTNKPTAPNSAFTKPATSTG-------DNKPTFSFGNTSKPTENTSTTATSAP 353
Query: 322 SPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSE 459
+N T PA+ + T++ + T T +KTG L KP++
Sbjct: 354 PLSNNTKPAEGANQTSSGFSFGKPATDTTTSTSKTG-PLFGNKPAD 398
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 173 LFAVFSTAGFPSCGTD*SLRQADNDNKHINITLFILNYG*KILGFT 36
L +FS+ GTD +++Q D +I+ L +LN G + FT
Sbjct: 784 LMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFT 829
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 202 KEVLDASRNLSEVPSNVPTQSEN 270
K V +N VPS +PT+SEN
Sbjct: 411 KGVSSTVKNEVNVPSTIPTESEN 433
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 67 KMKRVIFICLLSLSACLSDQSVPQDGKPAVENTANKASVDPKPQTKEV 210
++ R+ + L + C++D+ ++ K AVE + V P P TK+V
Sbjct: 611 RLYRIRVLLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPNPITKQV 658
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 153 CWFSILWYGLIAQTSRQR**TYKYYPLHLKLRVKDIRL 40
CW SI W+ + + + KYY L+ ++ D+++
Sbjct: 162 CWRSIAWWSFLVDSLPDKKLIDKYYQLNEQICDYDVQI 199
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/78 (20%), Positives = 28/78 (35%)
Frame = +1
Query: 133 PQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXX 312
P KP +TA K P+P T + + P+N P+ N
Sbjct: 216 PVAAKPEASSTATKG---PRPTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSAS 272
Query: 313 XXNSPTNQTIPAKTNSNT 366
+ + + P+ T+S +
Sbjct: 273 NSPALSGSSTPSNTSSRS 290
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -2
Query: 354 CLCRNGLVCW*VLYRW*TLWWGSLCWRSILTLCWN 250
C C + CW + +W+G CW S C N
Sbjct: 22 CFC---IKCWESVPSTSQVWFGGKCWHSDCFKCVN 53
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 319 NSPTNQTIPAKTNSNTTNSIVTDPKSNATKTED 417
N+PT N+N T+S+ ++ +KT D
Sbjct: 266 NTPTPSNNGTSINANVTSSLTSNSTGKTSKTTD 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,831
Number of Sequences: 5004
Number of extensions: 34935
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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