Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J05
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0358 + 9373440-9373500,9375106-9375632 31 0.53
02_02_0356 + 9336558-9337091 31 0.53
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 31 0.53
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121... 31 0.70
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132... 31 0.70
12_02_0335 - 17669232-17670063,17670619-17672150 29 2.1
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 29 2.1
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 29 2.8
12_02_1024 - 25449163-25449824,25451882-25452191 29 3.7
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 29 3.7
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 29 3.7
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456... 29 3.7
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604... 28 4.9
10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978 28 6.5
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739... 28 6.5
02_03_0299 + 17439626-17439742,17441119-17441229,17441630-17441869 28 6.5
04_03_0691 - 18756812-18756883,18757453-18757590,18758017-187583... 27 8.6
>02_02_0358 + 9373440-9373500,9375106-9375632
Length = 195
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 88 ICLLSLSACLSDQSVPQDGKPA--VENTANKASVDPKPQTKEVLDASRNL 231
IC L + C +S+P++G PA + A + SVD K Q K + +++++L
Sbjct: 141 ICTLGIVGCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDL 190
>02_02_0356 + 9336558-9337091
Length = 177
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 88 ICLLSLSACLSDQSVPQDGKPA--VENTANKASVDPKPQTKEVLDASRNL 231
IC L + C +S+P++G PA + A + SVD K Q K + +++++L
Sbjct: 123 ICTLGIVGCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDL 172
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 88 ICLLSLSACLSDQSVPQDGKPA--VENTANKASVDPKPQTKEVLDASRNL 231
IC L + C +S+P++G PA + A + SVD K Q K + +++++L
Sbjct: 1216 ICTLGIVGCPEIRSLPEEGIPASLKKLLAMRCSVDLKDQLKRLEESNQDL 1265
>12_01_0160 -
1212295-1213586,1213828-1213976,1214288-1214445,
1214860-1215004,1215102-1215226
Length = 622
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 142 GKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSN 249
G+P VEN + V+P KE +D N+ +P N
Sbjct: 508 GEPKVENACHHGLVEPTVNLKEAMDDINNMFGIPLN 543
>11_01_0161 -
1327286-1328592,1328819-1329000,1329279-1329436,
1329852-1329996,1330083-1330207
Length = 638
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 142 GKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSN 249
G+P VEN + V+P KE +D N+ +P N
Sbjct: 524 GEPKVENACHHGLVEPTVNLKEAMDDINNMFGIPLN 559
>12_02_0335 - 17669232-17670063,17670619-17672150
Length = 787
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +1
Query: 346 AKTNSNTTNSIVTDPKSNATKTEDN----KTGDKLPEGKPSEEK 465
A T+ ++T+SI T+P S A + N K+GDK PE SEEK
Sbjct: 306 ASTSCSSTSSI-TNPTSCADDEKTNLGPEKSGDKSPEWLRSEEK 348
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +1
Query: 343 PAKTNSNT----TNSIVTDPKSNATKTEDNKTGDKLPEGKPSEE 462
P+ TNS+T TN+ V DPK++A + + G +L +P+++
Sbjct: 511 PSCTNSSTGVPPTNNEVNDPKADAADGDSVENGTRLNSEEPAQD 554
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Frame = +1
Query: 139 DGKPAVENTANKASVDPKPQTK--EVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXX 312
DG P ++ + + P+T+ VLD LS S P +N
Sbjct: 542 DGSPGFDHDQTEGTTPGTPRTRIASVLDEIDPLSSADSPHPDPIQNDDSDNHMSLQDSRT 601
Query: 313 XXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGD 432
++ ++ +K N N ++ TDP T +D D
Sbjct: 602 VRDN-NYESDKSKANKNDDKNVSTDPAFLGTVDDDKNVMD 640
>12_02_1024 - 25449163-25449824,25451882-25452191
Length = 323
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 328 TNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKASH 483
T + + TN S + +P T T+ +K GD + KP+ K ++ H
Sbjct: 105 TTSAVESVTNLQARTSPLPNPVVPQTGTKASKRGDSGAKAKPAAAKKRRSKH 156
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/121 (17%), Positives = 47/121 (38%)
Frame = +1
Query: 118 SDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXX 297
SD + +D KPA + K + ++ + S+ +VPT+S+
Sbjct: 148 SDDEMDEDEKPAAPVKKTSVTAQKKKDDSDSSESESDESDSDEDVPTKSKAPAVAAKNDD 207
Query: 298 XXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKA 477
S + A + S + ++ ++ D++ K P+ K ++E++ +
Sbjct: 208 STDGSESESDSEDEDAAPKGAAKKESSSDEEDDSSEESSDDE--PKQPQQKKAQEESSEE 265
Query: 478 S 480
S
Sbjct: 266 S 266
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Frame = +1
Query: 115 LSDQSVPQ-DGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXX 291
+ D +V + D K A + A A+V+ + D + + + T + +
Sbjct: 1178 VEDATVEEPDKKTAANDPAEDATVEEPDKKTAANDHVEDATLEEPDKKTAANDHVEDVTV 1237
Query: 292 XXXXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTE-DNKT 426
N P + IP +T+ NTT + DP + T E D KT
Sbjct: 1238 EEPDKKTAANDPVEEVIPEETDKNTTTN---DPVEDVTIEEPDMKT 1280
>02_01_0610 +
4564016-4564018,4564166-4564243,4564764-4564788,
4564870-4564902,4565034-4565155,4565230-4565360,
4565509-4565732,4565824-4566065,4566268-4566357
Length = 315
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 343 PAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKASHR 486
PAK +N TNS+ S + + KT +KL G P + K + +
Sbjct: 240 PAKRQANATNSVQPSTASTSQSSSSRKTTEKLVFG-PGGNRTSKETEK 286
>11_06_0141 +
20559828-20559986,20560074-20560281,20560375-20560433,
20560532-20560590,20560809-20560886,20560974-20561073,
20561174-20561245,20561327-20561434,20561677-20561730,
20562847-20563296
Length = 448
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Frame = +1
Query: 133 PQDGKPAVENTANKASVDPK---PQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXX 303
P+ G+ N+A ASVD + + + ++ +N P +
Sbjct: 308 PKLGRHKPTNSAAAASVDGSVSCESPRSITNLAKLTESTENNKPHATARKPAQRSVTKIP 367
Query: 304 XXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKASH 483
+ T +T P T T+N+ P++ + +DN ++P +PS + H
Sbjct: 368 SQASATAKT-ETKPLVTKQKTSNTKPKAPRAKVEQLQDNSV--EIPPAEPSGPEGLTVEH 424
>10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978
Length = 299
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 236 KYHQMFQHKVRMLLQHKLPHHKVHHLYRTHQQ 331
K Q ++ R L LP H ++HL + H+Q
Sbjct: 123 KQQQAYEAARRTKLNQSLPKHTINHLAKRHKQ 154
>05_03_0017 -
7392742-7393110,7393212-7393319,7393522-7394079,
7394186-7394311,7394396-7394521,7394673-7395137,
7396822-7396901,7397394-7397664
Length = 700
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -3
Query: 266 SLCVGT--FD-GTSLKFLEASSTSFVCGLGSTEALFAVFSTAGFPSCGTD*SLRQADNDN 96
++C+GT +D GTS ++A ++ CG G S GFPS + + + N
Sbjct: 404 AVCLGTIYYDVGTSYAAIQARAS---CG-GFVSGFMTFMSIGGFPSFIEEMKMFTLERQN 459
Query: 95 KHINITLFILN 63
H + +I++
Sbjct: 460 GHYGVAAYIIS 470
>02_03_0299 + 17439626-17439742,17441119-17441229,17441630-17441869
Length = 155
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 391 KSNATKTEDNKTGDKLPEGKPSEE 462
++ A +++D +T DK+ EG P EE
Sbjct: 129 QATAIESKDTQTSDKIAEGPPKEE 152
>04_03_0691 -
18756812-18756883,18757453-18757590,18758017-18758308,
18758485-18758648,18759159-18759434,18759512-18759718,
18760303-18760475,18761978-18762139,18762561-18762720
Length = 547
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 227 FLEASSTSFVCGLGS--TEALFAVFSTAGFPSCG 132
F + + SF LGS A+FA FS A PSCG
Sbjct: 38 FEDIAVASFPRPLGSQVAGAIFAFFSEANVPSCG 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,447
Number of Sequences: 37544
Number of extensions: 190104
Number of successful extensions: 590
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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