Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J05
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013) 32 0.40
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 32 0.40
SB_30246| Best HMM Match : IspA (HMM E-Value=0.39) 31 0.71
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.2
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_31765| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 29 2.9
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28) 28 6.6
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 28 6.6
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 6.6
SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4) 27 8.7
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17) 27 8.7
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 27 8.7
SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046) 27 8.7
>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 459
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = +1
Query: 199 TKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSI 378
T D + N ++V +N T N TN T K+N+ +
Sbjct: 286 TNSTTDMTDNTTDV-TNSTTDMTNSSIEMTNSTTDVTDNTTEMTNSTTDMKSNTTEMTNS 344
Query: 379 VTDPKSNATKTEDNKT 426
TD KSN T+ ++ T
Sbjct: 345 TTDMKSNTTEMTNSTT 360
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 31.9 bits (69), Expect = 0.40
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Frame = +1
Query: 118 SDQSVPQDGKPAVE-NTANKASV-DPKPQTK-EVLDASRNLSEVPSNVPTQSENXXXXXX 288
S++ DG+PA E + K + D +P +K + + + + P++ P QSE
Sbjct: 170 SEKGKQGDGQPASEPKQSEKGKLGDGQPASKSKQSEKDKQGDDQPASEPKQSEKGKLGDG 229
Query: 289 XXXXXXXXXXNSPTNQTIPAKTNSNTTNSIVTD--PKSNATKTEDNKTGDKLPEGKPSEE 462
PA + D P S ++E K GD P GKP +
Sbjct: 230 QPASKPKQSEKGKQGDGQPASEPKQSEKGKQGDGQPASEPKQSEKGKQGDGQPAGKPKQS 289
Query: 463 KNYK 474
+ K
Sbjct: 290 EKGK 293
>SB_30246| Best HMM Match : IspA (HMM E-Value=0.39)
Length = 1502
Score = 31.1 bits (67), Expect = 0.71
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 239 YHQMFQHKVRMLLQHKLPHHKVHHLY 316
Y+ + + + LLQH++P + HHLY
Sbjct: 185 YNTGYPNTTKQLLQHRIPRYSKHHLY 210
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 251 FQHKVRMLLQHKLPHHKVHHLY 316
+ + + LLQH++P + HHLY
Sbjct: 228 YPNTTKQLLQHRIPRYSKHHLY 249
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 30.7 bits (66), Expect = 0.93
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Frame = +1
Query: 136 QDGKPAVENTANKASVDPKPQTKEVLDASR-NLSEVPSNVPTQSENXXXXXXXXXXXXXX 312
++ K +N +K + K +TKE D ++ N + N EN
Sbjct: 416 KENKDKTKNNKDKTK-ENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKEN 474
Query: 313 XXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKN 468
+ N+ K N + T K+N KT++NK DK E K ++N
Sbjct: 475 KDKTKENKD-KTKENKDKTKENKDKTKNNKDKTKENK--DKTNENKDKTKEN 523
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 193 PQTKEVLDASRN-LSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTT 369
P +V AS + +++ SNVPT S+N +P+ +P T+
Sbjct: 899 PSASDVPTASDDQVTQSASNVPTASDNQVTPSASDVLTAKDDHVTPSASDVP-----TTS 953
Query: 370 NSIVTDPKSNATKTEDNK 423
+ VT S+ T T DN+
Sbjct: 954 DDQVTQSASDVTSTSDNQ 971
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +1
Query: 118 SDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRN-LSEVPSNVPTQSENXXXXXXXX 294
SD D +P+ + + + P + +V S + ++ S+VPT S++
Sbjct: 619 SDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPTTSDDHVTPSASD 678
Query: 295 XXXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSN 399
+P+ +PA +++ T S P ++
Sbjct: 679 VPTTSDDQVTPSASDVPAASDNQVTPSASDVPSAS 713
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 322 SPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPE 444
SP N+T+ K+N T + PK + T +DN D P+
Sbjct: 1623 SPKNETVTEKSNVTLTCQLECKPKCSVTWLKDNTPLDTSPD 1663
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 322 SPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPE 444
SP N+T+ K+N T + PK + T +DN D P+
Sbjct: 2065 SPKNETVTEKSNVTLTCQLECKPKCSVTWLKDNTPLDTSPD 2105
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Frame = +1
Query: 187 PKPQTKEVLDASRNL-SEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSN 363
P QT + + N + P+N PT N PTNQT N
Sbjct: 209 PYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPN 268
Query: 364 TTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKASHR 486
++ TD +N P +P+ +HR
Sbjct: 269 QPTNLPTDQPTNQPANLQTTHAPSQPADQPTNRSLDCRAHR 309
>SB_31765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 293 HHKVHHLYRTHQQTKP 340
HH++ L+RTH QTKP
Sbjct: 217 HHELQALHRTHSQTKP 232
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 293 HHKVHHLYRTHQQTKP 340
HH++ L+RTH QTKP
Sbjct: 1800 HHELQALHRTHSQTKP 1815
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 29.1 bits (62), Expect = 2.9
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 127 SVPQDGKPAVENTANKASV-DPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXX 303
++P+ G V + N+ DP PQ K + + S NV TQ +N
Sbjct: 693 TIPEMGNYEVAPSENRGPTPDPIPQYKPMNNTPARPSN-RRNV-TQYDNVTQGGNVTQYE 750
Query: 304 XXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYK 474
N +Q +PA ++ NS +++ + N TGD +G+PS E K
Sbjct: 751 AINN-NRLRDQHVPANRQYDSFNSTRMSGQNHPARRARNNTGD---QGEPSYENTRK 803
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Frame = +1
Query: 118 SDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXX 297
SD S + NT N S + +++ + S ++ S
Sbjct: 70 SDNSNSDNSNSDNSNTDNSNSDNSSSDNSSSDNSNSDNSNTDNSTSNNSNPENSTSDNSN 129
Query: 298 XXXXXXXNSPTNQTIPAKTNSNTTNS--IVTDPKSNATKTEDNKTGDKL 438
NS ++ + P +N+N +NS TD ++ T DN D L
Sbjct: 130 SNNSNQDNSNSDDSKPDNSNTNNSNSDNSNTDNSNSDNSTSDNSNPDNL 178
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/117 (23%), Positives = 42/117 (35%)
Frame = +1
Query: 118 SDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXX 297
+D S P + NT N S D D S + +N + EN
Sbjct: 261 ADNSNPDNSNSDNSNTDNSNS-DNSSSDNSNSDNSNTDNSTSNN--SNPENSTSDNSNSN 317
Query: 298 XXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKN 468
NS ++ P +N+N +NS D ++ T DN D L P+ + +
Sbjct: 318 NSNQDNSNSDDSK--PDNSNTNNSNS---DNSNSDNSTSDNSNPDNLTSDNPNTDNS 369
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/123 (19%), Positives = 41/123 (33%)
Frame = +1
Query: 118 SDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXX 297
SD S + N+ N S D D S + N + N
Sbjct: 200 SDNSTSDNSTSDNSNSDNSTS-DNSTSDNSNSDNSYTDNSTSDNSKKDNSNPNNSNTDNS 258
Query: 298 XXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKA 477
+N NSN+ NS + S+ + T+++ + + PE S+ N
Sbjct: 259 SSADNSNPDNSNSDNSNTDNSNSDNSSSDNSNSDNSNTDNSTSNNSNPENSTSDNSNSNN 318
Query: 478 SHR 486
S++
Sbjct: 319 SNQ 321
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/117 (19%), Positives = 43/117 (36%)
Frame = +1
Query: 118 SDQSVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXX 297
SD S D + +T++ ++ D D S+ + P+N T + +
Sbjct: 210 SDNS-NSDNSTSDNSTSDNSNSDNSYTDNSTSDNSKKDNSNPNNSNTDNSSSADNSNPDN 268
Query: 298 XXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKN 468
+N + NSN+ NS + SN + E N T D +++ +
Sbjct: 269 SNSDNSNTDNSNSDNSSSDNSNSDNSNTDNSTSNNSNPE-NSTSDNSNSNNSNQDNS 324
>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 349 KTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYK 474
KT +NTT ++ T+ K + K D + DK E + E+K YK
Sbjct: 102 KTKNNTTKNMKTNKKEDE-KYGDEEYEDKEYEDEGYEDKEYK 142
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Frame = +1
Query: 187 PKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNT 366
PKPQ + R + P++ ++ + N T PA+ +
Sbjct: 1811 PKPQRERPPRFERGKRKAPADEESKKGSVENNTDSASSNTASQENKVAALTEPAEGKATA 1870
Query: 367 TNSIVTDPKSNAT---KTEDNKTGDKL 438
T+ I DP + +T T D K D +
Sbjct: 1871 TSQIKGDPDTESTLEDTTNDEKKDDTI 1897
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 355 NSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKAS 480
+S+ + + T ED KT DKL EG P ++ + A+
Sbjct: 995 SSSCKKPFCDEDDDSETDEEDEKTEDKLAEGTPVDDNWFPAA 1036
>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
Length = 327
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +1
Query: 214 DASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPK 393
+++ N S SN T++ N S +N + + +N++T+NS +
Sbjct: 123 NSNNNNSTSNSNSSTRNNNNSTSNSNNSTRNNNNSTSNSNNST-SNSNNSTSNSNNSSNN 181
Query: 394 SNATKTEDNKTGD 432
+N+T +N T +
Sbjct: 182 NNSTSNSNNSTSN 194
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +1
Query: 322 SPTNQTIPAKTNSNTTNS--IVTDPKSNATKTEDNKTGDKLPE--GKPSEEKNYKASHR 486
SPT TIPA T+ N ++ P + +G K P+ +P E ++ K R
Sbjct: 957 SPTTGTIPASTSKNPVKDVCVIESPSPLSEYDIQESSGTKQPKQTDQPKETRSQKRRRR 1015
>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 238 VPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSIV 381
V +N T S N + T QT+P TN+ T+ SI+
Sbjct: 697 VATNTMTTSPNAKTETMSVAAATVTSSPNVTTQTMPVITNTVTSTSII 744
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 1/119 (0%)
Frame = +1
Query: 133 PQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSN-VPTQSENXXXXXXXXXXXXX 309
P KP V PKP T ++A R+ VP + +
Sbjct: 767 PVTPKPVTPKPVTPKPVTPKPVTTRPVEAVRHSPRRDRGVVPPEKKRETSNSEKKKEVAT 826
Query: 310 XXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKASHR 486
T P + + N I+TD K NA +K +E + AS +
Sbjct: 827 APTEKKKLPTAPNEKKKD-ANVIITDKKDNANVAVSDKKEANFNVSDKKKEADTNASDK 884
>SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)
Length = 393
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 233 VKYHQMFQH-KVRMLLQHKLPHHKVHHLYRTHQ 328
+K HQ+FQH K R + Q+ L H+V + HQ
Sbjct: 358 LKEHQVFQHLKERQVFQY-LKEHQVFQYLKEHQ 389
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 322 SPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKAS 480
SP + + NS T P+ N+T E N T PEG + + AS
Sbjct: 96 SPEGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTS---PEGNSTSPEGNSAS 145
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 331 NQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKNYKAS 480
N T P + NS + T P+ N+T E N T PEG + + AS
Sbjct: 107 NSTCP-EGNSTSPEGNSTSPEGNSTSPEGNSTS---PEGNSASPEGNSAS 152
>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
Length = 761
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 325 PTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEE 462
P+NQT+P + +SN T S T+ N T + + + L PS E
Sbjct: 295 PSNQTLPTELSSNETFS--TELPLNQTLPNELPSNETLSTVAPSNE 338
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = +1
Query: 199 TKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXX-XXXXNSPTNQTIPAKTNSNTTNS 375
T + N + N T + N +PT T T +NT N+
Sbjct: 138 TPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPNA 197
Query: 376 IVTDPKSNATKTEDNKT 426
T P AT T N T
Sbjct: 198 TTTTP--TATTTTPNAT 212
>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 370 NSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKN 468
+ + DP NA + K D++PE P+E+++
Sbjct: 736 HELTHDPPPNADEINTFKPSDEIPESAPAEDQD 768
>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 248 MFQHKVRMLLQHKLPHHKVHHLYRTHQQTKP 340
M ++ + + KL HH+ H LY +H+ P
Sbjct: 624 MSNQRIFVFMTSKLIHHRGHELYYSHRWINP 654
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 22/69 (31%)
Frame = +1
Query: 226 NLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNAT 405
N + + PT + +PT T P T + TT T P + T
Sbjct: 9 NTAPATTTAPTTATAPTTTTAPTTNTALTTTTAPTTTTAPTTTTAPTT---TTAPTTTTT 65
Query: 406 KTEDNKTGD 432
D T D
Sbjct: 66 PNNDYNTSD 74
>SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)
Length = 811
Score = 27.5 bits (58), Expect = 8.7
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 1/114 (0%)
Frame = +1
Query: 127 SVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPS-NVPTQSENXXXXXXXXXXX 303
S P+ P+ +N S +PKP N S P N P N
Sbjct: 570 SNPKPNNPSSNPKSNNPSSNPKPNNPSSNPRPNNPSSNPKPNNPXXXXNPSSNPKPNNPS 629
Query: 304 XXXXXNSPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEK 465
N+P++ K+NS +N +P SN +N + P S K
Sbjct: 630 SNPKPNNPSS---NPKSNSPASNPKSNNPSSN--PKPNNPASNPKPNNPSSNPK 678
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,844
Number of Sequences: 59808
Number of extensions: 238999
Number of successful extensions: 1153
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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