Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J05
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    31   0.58 
At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    31   0.77 
At5g05510.1 68418.m00598 protein kinase-related low similarity t...    29   3.1  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    28   5.4  
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to...    28   5.4  
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    27   9.5  
At5g06700.1 68418.m00757 expressed protein strong similarity to ...    27   9.5  
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t...    27   9.5  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 322 SPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKP 453
           SPT  T PAKT + + +S V  PKS A  +E +     +PE  P
Sbjct: 50  SPT--TAPAKTPTASASSPVESPKSPAPVSESSPPPTPVPESSP 91


>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 391 KSNATKTEDNKTGDKLPEGKPSEE 462
           ++ A KTE+ K GDK  E KP EE
Sbjct: 170 ETEAAKTEEKKEGDKKEEEKPKEE 193


>At5g05510.1 68418.m00598 protein kinase-related low similarity to
           SP|O60566 Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta (EC 2.7.1.-) {Homo sapiens}
          Length = 471

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 GKPAVENTANKASVDPKPQTKEVLDASRNLSEVP 243
           GKP  EN  +   VDP    KE ++   N+ + P
Sbjct: 194 GKPEAENACHHGLVDPTINMKEAMNTINNMFKEP 227



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 127 SVPQDGKPAVENTANKASVDPKPQTKEVLDASRNLSEVPSNV--PTQSEN 270
           S   D   AVEN  +   VDP    KE ++   N+   P N   P +S+N
Sbjct: 348 STISDEPEAVENACHHGLVDPTVNLKEAMEDINNMFGEPINFVRPNRSKN 397


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 213 QYLFCLWFRIHRSFICCIFYCWFSILWY 130
           ++++CLW   H+  IC   Y W  IL++
Sbjct: 342 EHVYCLW---HKEMICVCCYNWPEILFF 366


>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
           homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
           thaliana]
          Length = 723

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/85 (23%), Positives = 31/85 (36%)
 Frame = +1

Query: 205 EVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXXXXXXNSPTNQTIPAKTNSNTTNSIVT 384
           E LD  +   E   NVPT S +                +     T+P K +SN  +   +
Sbjct: 521 ERLDYKKLYDEEYDNVPTSSSDDDDWDKTARMGKEDSESEDEGDTVPLKQSSNAEDH-TS 579

Query: 385 DPKSNATKTEDNKTGDKLPEGKPSE 459
                 +K  D K   ++P+  P E
Sbjct: 580 KKLIRKSKRADKKDTLEMPQEGPGE 604


>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 322 SPTNQTIPAKTNSNTTNSIVTDPKSNATKTEDNKTGDKLPEGKPSEEKN 468
           S ++   P  ++SN T     +P+SN T T  + TG+     KPS +++
Sbjct: 152 SSSSSAPPRPSSSNGTRK--HEPQSNNTGTHHSSTGNHHHSSKPSAKQS 198


>At5g06700.1 68418.m00757 expressed protein strong similarity to
           unknown protein (emb|CAB82953.1)
          Length = 608

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
 Frame = +1

Query: 133 PQDGKPAVENTANKASV--DPKPQTKEVLDASRNLSEVPSNVPTQSENXXXXXXXXXXXX 306
           P+   P  +NT  ++ +     P  K    +   LS+  S   + +++            
Sbjct: 138 PETHTPVAKNTTFESPIVNGTNPDAKNNTSSHPLLSDKSSTTGSNNQSRTTADTETVNRN 197

Query: 307 XXXXNSPTNQ--TIPAKTNSNTTNSIVTDPKSNATKTED 417
                +P+    ++  KTNS++ +S  +      TKT D
Sbjct: 198 QTTSPAPSKAPVSVDLKTNSSSNSSTASSTPKKQTKTVD 236


>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 364

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 200 QKRYWMLQEI*VKYHQMFQHKVRMLLQHKLPHHKVHHLYRTHQQTKPF 343
           ++  W L E    +H + +     + +  +  H V H++RT+++ KP+
Sbjct: 31  EENVWKLYERWRGHHSVSRASHEAIKRFNVFRHNVLHVHRTNKKNKPY 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,775,431
Number of Sequences: 28952
Number of extensions: 170748
Number of successful extensions: 592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)