Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J04
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437...    35   0.049
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122     33   0.15 
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267           27   7.4  
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722...    27   9.8  

>04_04_0190 -
           23442824-23442846,23442891-23442949,23443613-23443737,
           23443767-23443901,23444195-23444301,23444488-23444566,
           23444856-23444942,23445045-23445281,23445783-23446128,
           23446486-23446694
          Length = 468

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 23/58 (39%), Positives = 29/58 (50%)
 Frame = -3

Query: 446 SLKFNFSKEASNTLTASSFSSECSSYGPSFKYTLFAMFSVIPCIDFKLDVIEVNEERI 273
           +L+F  S  ASNTL  S     CS YG  FK  LF   +++ C       I  NEER+
Sbjct: 48  TLRF-LSPHASNTL-GSFLEDHCSRYGRVFKSHLFCTPTIVSCDQELNHFILQNEERL 103


>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
          Length = 294

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 220 DPAHEELLTSLDIPNDDCIRSS----FTSITSNLKSIQGITLNIANKVY-LKEGPYELHS 384
           D   E L  SLD     C RS     +  I   +K I+G +      +Y + EGP+E+H 
Sbjct: 52  DGDSEALALSLDQSQGSCFRSREKYLYVQIDVEIKLIEGDSAGTVCTIYTISEGPWEIHD 111

Query: 385 EL 390
           E+
Sbjct: 112 EI 113


>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
          Length = 346

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 449 PSLKFNFSKEASNTLTASSFSSECSSYG 366
           PSL  ++   A      +S SSECSSYG
Sbjct: 108 PSLAGSYRARAPGPHATTSSSSECSSYG 135


>02_05_0729 -
           31271566-31271730,31271799-31271933,31272210-31272284,
           31273003-31273068,31273154-31273222,31273303-31273377,
           31273518-31273628,31273947-31274009,31274064-31274453
          Length = 382

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 274 IRSSFTSITSNLKSIQGITLNIANKVYLKEGPYELHSELKEDAVKV 411
           +RS   S TS +KS+ G  +   + V        LHS L+ ++V V
Sbjct: 259 LRSKIASATSAIKSVFGQEVQQQDAVMAISESARLHSSLRNESVPV 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,872
Number of Sequences: 37544
Number of extensions: 179927
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)