Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J04
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    35   0.031
At3g15180.1 68416.m01919 proteasome-related similar to 26S prote...    29   2.0  
At4g36480.1 68417.m05180 aminotransferase class I and II family ...    27   6.2  
At5g09290.1 68418.m01076 3'(2'),5'-bisphosphate nucleotidase, pu...    27   8.2  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 73  ELTMDAKAISSAVAKFSAKFLN-ELDKSQNVVSSPLSAEYXXXXXXXXXXDPAHEELLTS 249
           EL    +  ++ VA+ + K +  ++    NVV SP+S                 EE+L+ 
Sbjct: 2   ELGKSIENQNNVVARLAKKVIETDVANGSNVVFSPMSINVLLSLIAAGSNPVTKEEILSF 61

Query: 250 LDIPNDDCIRSSFTSITSNLKSIQGITLNIANKVYLKEGPYELHSELKEDAVKVFDASFE 429
           L  P+ D + +    I         + L+ A+ V++ +  Y L    KE     + AS  
Sbjct: 62  LMSPSTDHLNAVLAKIADGGTERSDLCLSTAHGVWIDKSSY-LKPSFKELLENSYKASCS 120

Query: 430 KLNF 441
           +++F
Sbjct: 121 QVDF 124


>At3g15180.1 68416.m01919 proteasome-related similar to 26S
           proteasome non-ATPase regulatory subunit 5 (26S
           proteasome subunit S5B) (26S protease subunit S5 basic)
           (Swiss-Prot:Q16401) [Homo sapiens]
          Length = 519

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 337 IANKVYLKEGPYELHSELKEDA-VKVFDASFEKLNFNDGAASAAAINKMG 483
           I+ ++  KE  Y++  E    A +   D S E +  ND  A  AAI+ +G
Sbjct: 272 ISGRLLSKENIYKVVEEASVKALISAIDGSLESVEMNDTDAQEAAIDALG 321


>At4g36480.1 68417.m05180 aminotransferase class I and II family
           protein similar to Serine palmitoyltransferase 1 (EC
           2.3.1.50) from Homo sapiens [SP|O15269], Mus musculus
           [SP|O35704], Cricetulus griseus [SP|O54695]
          Length = 482

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 359 FKYTLFAMFSVIPCIDFKLDVIEVNE 282
           + Y L  MFS IPC   K DVI  +E
Sbjct: 175 YSYGLSTMFSTIPCFCKKGDVIVADE 200


>At5g09290.1 68418.m01076 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 345

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 289 TSITSNLKSIQGITLNIANKVYLKEGPYELHSELKEDAVKVFDA 420
           T + S+ K I  I  +IANK+ +K  P  +HS++K  A+   DA
Sbjct: 217 TFVESSHKPIP-IHSSIANKLGIKAPPLRIHSQVKYAALARGDA 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,498
Number of Sequences: 28952
Number of extensions: 162342
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)