Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J02
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 161 3e-41
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 156 1e-39
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.33
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 1.3
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 3.1
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 3.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 4.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 4.1
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 4.1
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 5.4
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 24 7.1
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 24 9.4
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.4
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 161 bits (392), Expect = 3e-41
Identities = 73/106 (68%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Frame = +2
Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 205
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASVY+
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 206 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRD 340
+ +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+ + RD
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 156 bits (379), Expect = 1e-39
Identities = 71/109 (65%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
Frame = +2
Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 205
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASVY+
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 206 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMAR 349
+ +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+ + RD R
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKR 109
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.33
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 107 RCVPKDKAIKKFVIRNIVEAAAVRDI 184
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 154 YC*SCRCEGHKRSLSIYFIPTSQAVCKTPLL 246
+C +C H+ I F+P Q CK LL
Sbjct: 213 FCDNCNTSVHQNCYGIPFVPEGQWFCKKCLL 243
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 228 MQNSTTACHARSI-AKWCVTDLRRTGGSVHHPRATSQG 338
M+ + + AR + KW + + RR GSV RA G
Sbjct: 1 METNGSFSGARLVDGKWIIPESRRKDGSVRRERAVKPG 38
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 278 APLCYGSRMTRSSGVLHTAWEVGMKYILRLRL 183
+P+ G +MT S + T ++ G + LRL
Sbjct: 954 SPMSQGDKMTSSESTVSTTYDFGFEAAYNLRL 985
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 305 IRTPPKSNFPRDMAR 349
IRTP KS FP+D A+
Sbjct: 157 IRTPKKSYFPKDHAK 171
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 4.1
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 116 PKDKAIKKFVIRNIVEAAAVRDINEASVYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKK 295
P+ + + K + NI + +V ++ +T+ + ++Y LH VS VVRN +
Sbjct: 648 PESEYLLKQCLSNISLSNSVISLSNPKFWTN-ERGEVYGILHIQVSIDGDLNVVRNEVFR 706
Query: 296 DRRIRTPPKSNFPRDMARPQN 358
I P + RP N
Sbjct: 707 KLSIAVPNLKHICIQSERPNN 727
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 245 CVSCAIHSKVVRNRSKKDRRIRTPPKS 325
C SC+ K N+ + RR++ PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 118 QRQSHQKVCDQEYC*SCRCEGHKRSLSIYFIPTSQAV 228
++QSH ++ + C S GH ++YF + Q +
Sbjct: 51 RQQSHSRITISKQCVSWIGNGHAAETTLYFPASHQQI 87
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 322 LGWCTDPPVLLRSVTHHFAMDRA*HAVVEFCIQLGK 215
+G PV T H ++++ HAV+ C +L +
Sbjct: 136 VGQILQVPVFPEESTFHLSIEQYLHAVLSLCSELAR 171
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 222 SCMQNSTTACHARSIAKWCVTDL 290
SCM+N A R I K+ TDL
Sbjct: 62 SCMRNEEPASKQREIEKFLRTDL 84
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 9.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 20 RNMTRKRRNGGRAKHG 67
R R RR GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,514,600
Number of Sequences: 5004
Number of extensions: 27704
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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