Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_J02
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             185   1e-47
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.026
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  29   1.7  
SB_47654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)                 27   4.0  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)              27   6.9  
SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)                 27   6.9  
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_22744| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)                   26   9.2  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  185 bits (450), Expect = 1e-47
 Identities = 84/98 (85%), Positives = 91/98 (92%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 205
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI +ASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 206 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 319
            + LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +2

Query: 101 CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INEASVYTSFQLPKLYAKLHYC--VS--CA 259
           C R C+ +D+ I  FVI     AAAVRD  + + ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 260 IHSKVVRNRSKKDRRIR 310
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 225 SLGSWNEVYTEASFMSLTAAASTIFL 148
           SLGS+N VY  A+ +SLT AA   F+
Sbjct: 254 SLGSYNAVYYLAASLSLTGAAVMTFI 279


>SB_47654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 355 LWTRHIPWEVALGWCTDPPVLLRSVTH 275
           L+TR++ WE A+  CT     L  VTH
Sbjct: 16  LFTRNLNWEAAVSACTAEGAELTPVTH 42


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 8   DSEVRNMTRKRRNGGRA-KHGRGHVKAVR 91
           D+EV N +R+ RNG R  KH    V   R
Sbjct: 255 DNEVENASRRNRNGSRGLKHAHSDVHEYR 283


>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
          Length = 572

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 225 SLGSWNEVYTEASFMSLTAAASTIFL 148
           SLGS+N VY  A+ ++LT AA   F+
Sbjct: 347 SLGSYNAVYYLAAALTLTGAALMTFI 372


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 184  YVPHSGSFNNIPDHKLFD 131
            YV  S +F+ +P HKLFD
Sbjct: 984  YVDFSKAFDRVPRHKLFD 1001


>SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)
          Length = 469

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 184 YVPHSGSFNNIPDHKLFD 131
           YV  S +F+ +P HKLFD
Sbjct: 281 YVDFSKAFDRVPRHKLFD 298


>SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)
          Length = 327

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 184 YVPHSGSFNNIPDHKLFD 131
           YV  S +F+ +P HKLFD
Sbjct: 58  YVDFSKAFDRVPRHKLFD 75


>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 184 YVPHSGSFNNIPDHKLFD 131
           YV  S +F+ +P HKLFD
Sbjct: 281 YVDFSKAFDRVPRHKLFD 298


>SB_22744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 285 DLRRTGGSVHHPRATSQGIWRVHRMYRG 368
           DL RT   +H  R  ++ +W +H  Y G
Sbjct: 28  DLVRTSSPLHTIRHPARQLWHIHCFYTG 55


>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 936

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 240 WSFAYSLGSWNEVYTEASFMSLTAAASTIFLITNFLMALSLGTQRAQ 100
           W++   L +W   Y +   +S T A S   + T  L  L L  ++ Q
Sbjct: 213 WNYTVRLANWLYEYVDQFVLSQTLAKSLAQVCTKKLSTLYLAAEQMQ 259


>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 735

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 245 CVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMARPQN 358
           C +C I  K V NR++K     T P      D+A P N
Sbjct: 12  CNTC-IEGKFVNNRNRKPDARATRPSERIHTDLAGPIN 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,865,385
Number of Sequences: 59808
Number of extensions: 225498
Number of successful extensions: 668
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)