Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J02
(385 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 163 5e-41
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 160 3e-40
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 160 3e-40
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 27 3.3
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 27 4.3
At5g26920.1 68418.m03210 calmodulin-binding protein similar to c... 26 7.5
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 26 7.5
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi... 26 7.5
At5g59110.1 68418.m07407 subtilisin-like serine protease-related... 26 9.9
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa... 26 9.9
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 26 9.9
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 26 9.9
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 26 9.9
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 163 bits (395), Expect = 5e-41
Identities = 73/113 (64%), Positives = 86/113 (76%)
Frame = +2
Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 205
MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ EASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 206 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMARPQNVQ 364
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTPP R P+ Q
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 160 bits (389), Expect = 3e-40
Identities = 69/98 (70%), Positives = 81/98 (82%)
Frame = +2
Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 205
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ EASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 206 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 319
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 160 bits (389), Expect = 3e-40
Identities = 69/98 (70%), Positives = 81/98 (82%)
Frame = +2
Query: 26 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 205
MT KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ EASVY
Sbjct: 1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60
Query: 206 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 319
+ LPKLYAK YCVSCAIHS VVR RS+ +RR+RTPP
Sbjct: 61 GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPP 98
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 236 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMARPQNVQRK 370
L S A+ + V N+SKK PP FPR ++ P +RK
Sbjct: 26 LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRRK 69
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 53 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASV 199
+ K ++KAV AR P+DK + K V +V+ AA + ++EA +
Sbjct: 361 KEKPETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAA-KKVSEAEI 408
>At5g26920.1 68418.m03210 calmodulin-binding protein similar to
calmodulin-binding protein TCB60 GI:1698548 from
[Nicotiana tabacum]
Length = 492
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 246 ACHARSIAKWCVTDLRRTGGSVHHPRATSQGIWRVHRM 359
A ARS A C D R HHP S +WR+ ++
Sbjct: 142 AVEARSEAFGC-RDQRGESYKKHHPPCPSDEVWRLEKI 178
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 26.2 bits (55), Expect = 7.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 278 RNRSKKDRRIRTPPKSNFPRDMARPQNVQR 367
RNRS+ R ++PP+ + R+ R ++ +
Sbjct: 871 RNRSESQNRSQSPPQKSLTRERVRDHDLDK 900
>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 26.2 bits (55), Expect = 7.5
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 152 NIVEAAAVRDINEAS-VYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKS 325
+I +AA + + S Y LP+ + + Y +S A + R ++ RR+R PP +
Sbjct: 2 SISKAAFLNHLQTLSRSYRHRVLPQPFLAVRY-MSFATQEEAAAERRRRKRRLRMEPPVN 60
Query: 326 NFPRDMARPQNVQR 367
+F R + + R
Sbjct: 61 SFNRSQQQQSQIPR 74
>At5g59110.1 68418.m07407 subtilisin-like serine protease-related
similar to prepro-cucumisin GI:807698 from [Cucumis
melo], subtilisin-like protease C1 [Glycine max]
GI:13325079
Length = 172
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 47 GGRAKHGRGHVKAVRCTNCARCVPKDKA 130
G RA +G GHV + TN DKA
Sbjct: 2 GKRATYGAGHVDPIAATNPGLVYEMDKA 29
>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
family protein
Length = 630
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 383 NKLPTSSVHSVDAPYPLGSCSWVVYGS 303
N PTS V ++ + +G C W + GS
Sbjct: 433 NSTPTSDVRTLLSASSIGLCQWNISGS 459
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 101 CARCVPKDKAIKKFVIRNIVEAAAVRDIN 187
CARCVP K I+ + +V +A D+N
Sbjct: 609 CARCVPMGKGIET-KLPEVVNCSARTDLN 636
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 77 VKAVRCTNCARCVPKDKAIKK-FVIRNIVEAAA 172
V V+ TN C PKD+ ++K F ++ A A
Sbjct: 34 VAIVKATNHVECPPKDRHLRKIFAATSVTRARA 66
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 5 NDSEVRNMTRKRRNGGRAKHGRGHVKA 85
+ S N +R + +GG+ +H H KA
Sbjct: 146 DQSANHNSSRSKSSGGKPRHSESHTKA 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,173,963
Number of Sequences: 28952
Number of extensions: 154116
Number of successful extensions: 484
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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