Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_J01
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 38 0.005
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 37 0.007
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 33 0.12
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 30 0.83
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste... 30 1.1
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste... 29 1.4
At5g21222.1 68418.m02532 protein kinase family protein contains ... 28 3.3
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 28 3.3
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 28 3.3
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 28 4.4
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 28 4.4
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 4.4
At1g66970.1 68414.m07615 glycerophosphoryl diester phosphodieste... 28 4.4
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 7.7
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet... 27 7.7
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 27 7.7
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 7.7
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 27 7.7
At1g19550.1 68414.m02435 dehydroascorbate reductase, putative si... 27 7.7
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 97 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 261
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKE 112
Query: 262 VVTKFMETFKMG 297
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 37.1 bits (82), Expect = 0.007
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 97 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 261
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKE 112
Query: 262 VVTKFMETFKMG 297
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 33.1 bits (72), Expect = 0.12
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +1
Query: 97 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 261
VI KDS K K + C K++NY + PT Y D+K V + K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKE 112
Query: 262 VVTKFMETFKMG 297
KF E FK G
Sbjct: 113 AKAKFEERFKTG 124
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 492 AVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENF 358
AV+ D ++ IY P F A FD ++ +GE YAE F
Sbjct: 476 AVKKTVDPKTQVIYNQNPDTNFV-KAGDFDYAIVAVGEKPYAEGF 519
>At5g55480.1 68418.m06910 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 766
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Frame = +1
Query: 184 TVYEDIKEVAREYM--LEENTDKYSKSDVVTK--FMETFKMGMLPRGEVFVHTNALQMEQ 351
TVY+ ++E R+ + E+ K++ + V++K T + + ++ Q+
Sbjct: 562 TVYK-VEETIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPV 620
Query: 352 AVKVFRILYFAKDYDYFIKTACWLRER-----INGGMFVYALTAAVFHRSDCVGITLPAP 516
V+VFR + ++ +D+F + ING + + LTAA + R+ C+ P
Sbjct: 621 YVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRKDVPP 680
Query: 517 Y 519
Y
Sbjct: 681 Y 681
>At4g26690.1 68417.m03846 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
glycerophosphodiester phosphodiesterase [Borrelia
hermsii] GI:1399038; contains Pfam profile PF03009:
Glycerophosphoryl diester phosphodiesterase family
Length = 759
Score = 29.5 bits (63), Expect = 1.4
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Frame = +1
Query: 220 YMLEENTDKYSKSDV--VTKFMETF---KMGMLPRGEVFVHTNA-----LQMEQA---VK 360
Y +EEN S + + KF + K+ + P + F+ T LQ Q V+
Sbjct: 557 YKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYVE 616
Query: 361 VFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGITLPAPY 519
+F+ + ++ YD+F + I NG + + TAA + R+ C+G PY
Sbjct: 617 LFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKETIPY 674
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 94 VVIGKDSLMK---ADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEE 234
+++ KD ++K A+ +EI IMKL+N+ +YE + A+ Y++ E
Sbjct: 42 MILDKDKVLKHKMAEQIKREISIMKLINHPNVVQLYEVLASKAKIYIVLE 91
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 313 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 438
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 313 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 438
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 259 DVVTKFMETFKMGMLPRGEVFVHT-NALQMEQAVKVFRILYFAKDYDYFIK 408
+ ++KFME KMG+ P F A V+ ++++++ + DY +K
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 311 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 141
P GSM I+ N + EY++V + ++YS + S + G S F+SF++ I+
Sbjct: 508 PNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEVIESIWVYGNS--FESFLVAIA 563
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +2
Query: 182 QLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMR 337
Q+C+ R + G CW K R + P+ L P Y + + +++
Sbjct: 783 QVCSDLERDANGKACWSKKRKFDKIPLGLNTLVAPEDVCSYESMLAGLFRLK 834
>At1g66970.1 68414.m07615 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family
Length = 763
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 340 QMEQAVKVFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGIT 504
Q+ V++FR + ++ YD+F + I NG + + TAA + R+ C+G
Sbjct: 617 QLPVYVELFRNEFVSQAYDFFSDATVEINAYIYGAGINGTITEFPFTAARYKRNRCLGRE 676
Query: 505 LPAPY 519
PY
Sbjct: 677 EVPPY 681
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 311 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 141
P GSM I+ N S EY++V + +IY ++ S + G S F+SF++ I+
Sbjct: 508 PDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNS--FESFLIAIA 563
>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 608
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 495 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 364
DA++ +E IYE P + F ++ +GE YAE
Sbjct: 453 DAIKEAVGDETEVIYEKTPSKETLASSEGFSYAIVAVGEPPYAE 496
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 198 HQGSREGIYAGGKHGQV 248
H GS+E +YAGG G V
Sbjct: 316 HVGSKEEVYAGGSRGSV 332
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 172 VLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQ 351
++ P+V ED ++ +++ + ++K V+T +FK LP+G +V + LQ ++
Sbjct: 1338 IVSPSVSEDGDNGSKPK--KQHVETFAKELVMTSDEASFKNRRLPKGYFYVPVDCLQEDK 1395
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 314 SPRGSMPILKVSMNFVTTSD 255
SP+G +P+LK+ +VT SD
Sbjct: 55 SPQGKVPVLKIDDKWVTDSD 74
>At1g19550.1 68414.m02435 dehydroascorbate reductase, putative
similar to dehydroascorbate reductase [Arabidopsis
thaliana] gi|10952514|gb|AAG24946
Length = 153
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 314 SPRGSMPILKVSMNFVTTSD 255
SP+G +P+LK+ +VT SD
Sbjct: 19 SPQGKVPVLKIDDKWVTDSD 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,837
Number of Sequences: 28952
Number of extensions: 227798
Number of successful extensions: 673
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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