Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I24
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    31   0.13 
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    27   2.8  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   3.7  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   3.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   4.9  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   6.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   8.6  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = -1

Query: 523  RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 344
            R QED + G   N+     G  E +  E ++          L  F G+ + +S +   I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168

Query: 343  KECD*FLNDNIIDFNADEMKFLLRIRLQV 257
             EC   L  N+ D   +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 197 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 346
           +P F Q Y  IVG I + K + + +P+ K     + I + V+E  VT+ D
Sbjct: 6   EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 271 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 134
           I  Q  L+ +  TH NPV    EC +S+C L   K  G E  L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 3   TMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL---AMCSVQHLNHSTSTPSCPVRL 173
           T+ R+  L +T  +   +C K+  + I  DL+  SL   A   +Q +   TS+ S PV L
Sbjct: 220 TLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTCFASDILQTVPEYTSSQSSPVLL 279

Query: 174 TFT 182
             T
Sbjct: 280 PAT 282


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 323 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATD 496
           E++V    + QF+A +    T+K + +  P   K R+ RL    F   +D +  D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 503 IKIFLGPKYNDXGFPITLEENWHKFYELDWF 595
           + I L P  ND  +  T    WHKF++  WF
Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWF 445


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 522 LSTTXMDSPSHWKKTGINSTNWIG 593
           LS   +   S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 95  YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 199
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 478 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 335
           LN+   TE ++     ++  +V V S N FFG    + G+   K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 204  HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 338
            +S S I   W T  HSS+  +L   R +  S +  ++  LRN  H
Sbjct: 973  NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +3

Query: 129 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 245
           HL  S STPS    LTF  T  +  T H       LW  L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,936
Number of Sequences: 5004
Number of extensions: 49211
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)