Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I23
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.4
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 28 1.4
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.1
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 7.2
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar... 25 7.2
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 7.2
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 7.2
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 25 9.5
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.5
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 181 VRASLSDSDVI*VLTDCCRMAV---RAYAHAPRVTNSHTLMNFILFYVRINDVRKRHVYR 11
VR+S+S I L D R+ V RA + V NS LM +FY I D + R V+R
Sbjct: 1721 VRSSMSGG--IGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWR 1778
Query: 10 D 8
D
Sbjct: 1779 D 1779
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 378 RSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSIGLR---LVQNSESAKFRHQLDDQRW 208
R++ YP S Y SSL++Y + T + +S+ Q + FR +LD W
Sbjct: 480 RATTYYPSSVTSHYINSSLKIYGSNEFETPEMISMAYEDGAYSQIEDMRNFRSRLDHSTW 539
Query: 207 RML 199
+ +
Sbjct: 540 KSI 542
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 411 PLPLHPD*SRFRSSNVYPMIDCSFY-PMSSLELYRNLLCRTSQSLSIGLRLVQNSESAKF 235
PLPL+ D S VY +ID F+ P SL + +LL S ++S L + + + KF
Sbjct: 56 PLPLNFDISVHLMPTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKF 115
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 282 DFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAG 407
D F D +L TT KRN WD+ + ++D +G
Sbjct: 606 DMTDFSASDDDPVLITTKIKRNANIWDLQKHLAGLLNRDTSG 647
>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 613 LAFNLEHTFLGTRISHDV 560
L F L+HTF+G +S D+
Sbjct: 121 LPFYLKHTFMGLAVSRDI 138
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 121 PYGSNLLILKSHHYRIR 171
PY SNLL+L + HY ++
Sbjct: 148 PYISNLLVLLTKHYHVK 164
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 369 NVYPMIDCSFYPMSSLELYR 310
N+YP+ID S Y +S+ Y+
Sbjct: 954 NIYPVIDDSIYELSAASKYQ 973
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 180 TKARVHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGK--FYKGDSYIILKTTSDKRNNL 353
+K R+ F + +W ++ +PV + +D GK F IL +R NL
Sbjct: 102 SKLRLENCFISGSWDKSFRVWDVRVKQPV--EGQDIGKKIFASSSRDNILVLGCSERENL 159
Query: 354 SWDI 365
+DI
Sbjct: 160 VYDI 163
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 381 FRSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSIGLRLVQN 253
F N+ P+ + ++SLEL +LLC S S L+ V N
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLN 182
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 427 SASMTSSVERRYNTARLWATRVTTSYSTSHLHYNTWMG 540
+ ++S + N L ++ + TSYS S + Y++W G
Sbjct: 48 NTDLSSQFFEQTNNGSL-SSLIDTSYSNSQICYSSWQG 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,515
Number of Sequences: 5004
Number of extensions: 62436
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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