Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I21
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   0.85 
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    26   3.4  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    26   3.4  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    26   3.4  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       26   4.5  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    26   4.5  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   6.0  

>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +1

Query: 193 YLGVNCEGIINLSVRNGTVDQGTRIVSINPVGAP 294
           Y G + +G+I+L VRN  + +G++++ I+  GAP
Sbjct: 294 YEGKSMQGLIHL-VRNNEIAEGSKVLYIHLGGAP 326


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 259 TRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAKKRIG 426
           TR V++NPV  PHG G +  Q + ++ T        +  +  PG+ + ++A +R G
Sbjct: 198 TRGVAMNPVDHPHGGGNH--QHVGHSTT--------VPRQSAPGQKVGLIAARRTG 243


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 259 TRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAKKRIG 426
           TR V++NPV  PHG G +  Q + ++ T        +  +  PG+ + ++A +R G
Sbjct: 198 TRGVAMNPVDHPHGGGNH--QHVGHSTT--------VPRQSAPGQKVGLIAARRTG 243


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 259 TRIVSINPVGAPHGQGGYLQQRLPNNETRTALLGNYLLSEGKPGKVIKVVAKKRIG 426
           TR V++NPV  PHG G +  Q + ++ T        +  +  PG+ + ++A +R G
Sbjct: 198 TRGVAMNPVDHPHGGGNH--QHVGHSTT--------VPRQSAPGQKVGLIAARRTG 243


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 303 LAMRSTHWVYGDDTSTLVHGAVAHAQIYYTL 211
           L M   HW++  D   + HG +A   + Y L
Sbjct: 157 LLMLLKHWLFERDLENVHHGGIASCALSYML 187


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 219 NKSERAQRHRGPGYSYRLHKPSGCSSWPG 305
           ++ +R Q   G G S+  H P  CS + G
Sbjct: 234 DRMDRIQNSSGSGGSHAAHHPKNCSLFDG 262


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 213 LAIDSEVWPWSSSGARQESGIPAQELEHLDHIVNLIALNCGHQVWRTTDLHK 58
           L ++ E   W S+G  Q        L+HLD +  L++     Q+     L K
Sbjct: 350 LHLEVEAMKWLSAGRTQFGDPDFLPLDHLDVVSKLLSKEFASQIRNNISLSK 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,414
Number of Sequences: 5004
Number of extensions: 60762
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)