Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I21
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                     87   1e-17
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)                     31   0.51 
SB_5200| Best HMM Match : Torsin (HMM E-Value=0)                       31   0.67 
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   2.7  
SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)                    28   6.3  
SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_28802| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00055)         27   8.3  
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   8.3  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 37/75 (49%), Positives = 54/75 (72%)
 Frame = +1

Query: 349 ALLGNYLLSEGKPGKVIKVVAKKRIGGSNFITAIRETLKNHYQDQVLGLGGMFLLRSGRV 528
           +LL N L++EGKPGKV+KV A KR G  NF+T +R  L ++Y ++ +G+GG F++  G+ 
Sbjct: 369 SLLANCLITEGKPGKVLKVEASKRTGDENFVTCMRLALGSYYGNRAVGIGGTFMIAKGKA 428

Query: 529 KFHVMPDFSTTALCS 573
            FH+MP+FS T L S
Sbjct: 429 NFHIMPEFSKTPLNS 443



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 35/59 (59%)
 Frame = +1

Query: 37  GLSGDAKLVEIGGPPYLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCE 213
           G  G  ++V++GGP YL+P  Q +KIYDM  +         ++ GAGAG    +GVNCE
Sbjct: 296 GFGGKPRIVDVGGPAYLLPLPQLNKIYDMNDVAAKADLPGGYVIGAGAGSHTSVGVNCE 354


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +3

Query: 63  GDRWSAIPGAHSSAR*DLRYDQDARVPGQGFRFLGGRRSWTMAIPRSQLRG-YNKSERAQ 239
           GDR+SA  G  +    D  Y    R  G   R+L   RS++    R   RG Y  +ER  
Sbjct: 215 GDRYSADRGYGA----DRGYGSSDRYGGSSERYLPPERSYSGG-DRGYDRGSYGGAER-D 268

Query: 240 RHRGPGYSYRLHKPSGCSSWPGRVPAAASAQQRDQD 347
                GYS   ++ S     P R PAAAS    D D
Sbjct: 269 YSSDRGYSSAPYERSSYGPPPQRSPAAASYSSGDND 304


>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
          Length = 576

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 247 VDQGTRIVSINPVGAPHGQGGYLQQRLPN----NETRTALLGNYLLSEGK 384
           ++  TR  ++ PVG   G  G L  R+ N    +E  T ++GN LL EG+
Sbjct: 515 IELKTRTGTVRPVGMRAGVEGALHIRMANIGHHSEMNTDMIGNVLLKEGQ 564


>SB_5200| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 291

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 138 LEHLDHIVNLIALNCGHQVWRTTDLHKFRI 49
           ++H+DH++NL A N     W TT + K  I
Sbjct: 235 IKHMDHLINLGAFNSNGGFWHTTLIEKHLI 264


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +3

Query: 165 GGRRSWTMAIPRSQLRGYNKSERAQRHRGPGYSY-RLHKPSGCSSWPGRVPAAASAQQRD 341
           G +RS+     RS  RGY +  +    RG   SY R ++ S   S+      +     + 
Sbjct: 148 GYKRSYERGNKRSYERGYKRGYKRGYERGYERSYKRSYERSYERSYKRSYVRSYERSYKR 207

Query: 342 QDCVTWKLSPK*RQTRKSYKSGSEETYWRIQLHNGYQGDLEKSLSR 479
               ++K S K R  ++SYK   E +Y R      Y+   E+S  R
Sbjct: 208 SYKRSYKRSYK-RSYKRSYKRSYERSYER-SYKRSYKRSYERSYER 251


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/94 (25%), Positives = 40/94 (42%)
 Frame = -3

Query: 345  PGLVVGQTLLQVPALAMRSTHWVYGDDTSTLVHGAVAHAQIYYTLAIDSEVWPWSSSGAR 166
            PGLV+G+T  Q   +          ++T+ L  G     +I   L  +  V     S   
Sbjct: 2939 PGLVIGRTTAQQGPVPPPVRQCRRAEETAFLNKGEKVDLEI--ALEREKIVTSDLESELE 2996

Query: 165  QESGIPAQELEHLDHIVNLIALNCGHQVWRTTDL 64
             E  + A ELE  + ++  ++ + GH+  R  DL
Sbjct: 2997 TERALQANELEKQNKLLEKLSADLGHERSRCEDL 3030


>SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 303 GRVPAAASAQQRDQDCVTWKL 365
           GR PAA + Q   Q+C++W L
Sbjct: 219 GRTPAAMATQSGHQECLSWLL 239


>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
          Length = 1250

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 165 GGRRSWTMAIPRSQLRGYNKSERAQRHRGPGYSYRLH 275
           G  R    A+P ++ +G+   E A+R RGP  S R H
Sbjct: 305 GATRDQPRAVPAAK-QGFRPCESARRGRGPASSPRAH 340


>SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 138 LEHLDHIVNLIALNCGHQVWRTTDLHKFRI 49
           ++H+DH+++L + N     W TT + K  I
Sbjct: 223 IKHMDHLIHLGSFNSNGGFWHTTLIEKHLI 252


>SB_28802| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00055)
          Length = 411

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -3

Query: 285 HWV---YGDDTSTLVHGAVAHAQIYYTLAIDSEVWPWSSSGARQESGIPAQELEHLD 124
           HW    + +D    +   + H +    + I +E W  SSS   +E GIP   +E  D
Sbjct: 3   HWTARSFNNDKYEQIKEILTHPRTEIDVMIITETW-LSSSHTNEEYGIPGYHIERKD 58


>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 142 LGRDSAFLAGAGAGPWPYLGV--NCEGIINLSVRNGTVDQGTRIVS--INPVGAPHGQGG 309
           L   + F       P P+ G+  +C+ I++   R    +  +RI +  +NP  +PHG  G
Sbjct: 23  LNMKNLFFRDGSWSPGPFSGIVFSCKDILS---RKSPFNASSRISTSGLNPENSPHGPHG 79

Query: 310 YL 315
           +L
Sbjct: 80  FL 81


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 357  WKLSPK*RQTRKSYKSGSEETYWRIQLHNGY 449
            W L+P    +R+++ S SE   +R+   NGY
Sbjct: 1012 WNLNPASWASRQTFNSTSERMLFRLYKRNGY 1042


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,306,687
Number of Sequences: 59808
Number of extensions: 517841
Number of successful extensions: 1292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)