Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I21
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta...    36   0.015
At3g51940.1 68416.m05697 expressed protein                             30   0.96 
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    29   2.2  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    28   5.1  
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    27   6.8  
At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citr...    27   9.0  
At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (...    27   9.0  
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ...    27   9.0  
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ...    27   9.0  
At3g11590.1 68416.m01416 expressed protein                             27   9.0  

>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
           47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 577

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 139 FLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNGTVDQ---GTRIVSINPVGAPHGQG 306
           ++GR S F+  A A PWP     C GI  + ++NGTV +   G       P   P G+G
Sbjct: 463 YVGRKSQFVYIAIADPWP----KCSGIAKVDIQNGTVSEFNYGPSRFGGEPCFVPEGEG 517


>At3g51940.1 68416.m05697 expressed protein 
          Length = 453

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 219 NKSERAQRHRGPGYSYRLHKPSGCSSWPG 305
           N+    +  RG GYS    +P GC+ W G
Sbjct: 306 NQGMEMKEWRGKGYSRDFREPKGCNPWKG 334


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
            (TATA-binding protein) -interacting protein 120 (TIP120);
            contains TIGRFAM profile TIGR01612:  reticulocyte binding
            protein
          Length = 1866

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 135  EHLDHIVNLIALNCGHQVWRTTD 67
            EHL+HI + + + CG ++WR+ +
Sbjct: 1172 EHLNHIFDDLLVQCGSRLWRSRE 1194


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 219  YTLAIDSEVWPWSSSGARQESGIPAQELEHLDHIVNL 109
            Y  A+D ++WP      + E  +P+   + LDH+  +
Sbjct: 1142 YCKAVDRQLWPHQHPLRQFERDLPSDRRDDLDHLYEM 1178


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 565 ELSSRSPASRGTLRGRNEVGTCLLNPTLGLDNDF 464
           ++S+RSP     L G +  G   L  T+G+D+DF
Sbjct: 523 KVSTRSPLVTCLLEGPSGSGKTALAATIGIDSDF 556


>At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citrate
           hydro-lyase / aconitase (ACO) identical to SP|Q42560
           Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase) {Arabidopsis thaliana};
           contains Pfam profiles PF00330: Aconitase family
           (aconitate hydratase), PF00694: Aconitase C-terminal
           domain
          Length = 898

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 64  EIGGPPYLVPTVQRDKIYDMIKMLEFLGRDSAFLAGAGAGPWPYLGVNCEGIINLSVRNG 243
           E+G     +PT ++  ++D        GRD+  LAGA  G         +G + L V+  
Sbjct: 741 EVGPKTVHIPTGEKLSVFDAAMKYRNEGRDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV 800

Query: 244 TVDQGTRIVSINPVG 288
                 RI   N VG
Sbjct: 801 ISKSFERIHRSNLVG 815


>At4g30160.1 68417.m04289 villin, putative similar to  villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 974

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 258 YSYRLHKPSGCSSWPGRVPAAASAQQRDQDCVTWKLS-PK*RQTRKSYKSGSE-ETYWRI 431
           Y Y LH  S   +W G +  A      DQ+    +L   K  Q  ++ K GSE E +W +
Sbjct: 548 YYYILHNDSSVFTWAGNLSTAT-----DQELAERQLDLIKPNQQSRAQKEGSESEQFWEL 602


>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 383

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 308 GTCSSVCP----TTRPGLRYLETIS*VKANPEK 394
           GTCSS+CP     TR  LR L     +  NP K
Sbjct: 72  GTCSSMCPERERVTRERLRDLAVFERLYGNPSK 104


>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 406

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 308 GTCSSVCP----TTRPGLRYLETIS*VKANPEK 394
           GTCSS+CP     TR  LR L     +  NP K
Sbjct: 72  GTCSSMCPERERVTRERLRDLAVFERLYGNPSK 104


>At3g11590.1 68416.m01416 expressed protein
          Length = 622

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +3

Query: 147 QGFRF-----LGGRRSWTMAIPRSQLRGYNKSERAQRHRGPGYSYRLHKPSG-CSSWPGR 308
           +G+RF     +G R   T  +P  +L G + S RA      G  +    PS  C S  G+
Sbjct: 35  EGYRFKRAIVVGKRGGSTTPVPTWRLMGRSPSPRAS-----GALHAAASPSSHCGSKTGK 89

Query: 309 VPAAASAQQRDQDCVTWKLS 368
           V A A    R      W+++
Sbjct: 90  VSAPAPVSARKLAATLWEMN 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,270
Number of Sequences: 28952
Number of extensions: 350471
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)