Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I20
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    31   0.10 
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   5.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  

>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 407 CILLYETVATYLLNRRVSNNSGRASRTSLTNHTQLSPHPIAL 282
           C+L +ET++ Y++ +R   N    + T  TNH Q+  HPI++
Sbjct: 53  CLLPFETISDYVIPKRELCNK---TITVCTNHYQVIGHPISI 91


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 332 ETLFRCYLILDDSGDTLQLFH-IIIYTL 412
           +T+F  Y +LD S  T+ LF  ++I+TL
Sbjct: 495 KTVFEKYCLLDHSTSTISLFFGLLIFTL 522


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 279 WESDGVGGELRVIGQRSPRRSSAVI*YSTIQEI 377
           W +DG+  +LR + ++  R+SS     STI +I
Sbjct: 770 WSNDGIDDKLRDLREQMSRQSSQPSTVSTILQI 802


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 316 ITRNSPPTPSL--SQGGVQTVHLHTKLYI*TDNNNKTIKHK 200
           + R  P TP L  S GG +   L    YI    +NK ++HK
Sbjct: 322 LLRRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPLEHK 362


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 178  TYLFKLDI*LPTHARSHTHTH 116
            TY  KLD+ LP  A  H  TH
Sbjct: 2321 TYSLKLDVPLPFFALEHRPTH 2341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,843
Number of Sequences: 5004
Number of extensions: 36038
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)