Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I20
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     27   9.0  
09_04_0282 - 16367886-16368587,16369209-16369345,16369764-163698...    27   9.0  

>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 205 VLLFYYYYQFRCTVLYVNAPSEPPLGRAMGWGESCV 312
           ++  Y++      +L VN  + P   R MGWG + V
Sbjct: 398 IIFLYFFIDAVVDILIVNKDAAPLYCRIMGWGRTPV 433


>09_04_0282 -
           16367886-16368587,16369209-16369345,16369764-16369899,
           16370021-16370422
          Length = 458

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 350 NSGRASRTSLTNHTQLSPHPIALPRGGSD-GAFTY 249
           +S R S TSL++   LSP  ++L   GS+  AFTY
Sbjct: 40  SSSRMSFTSLSSSGTLSPEDLSLTLSGSNLYAFTY 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,884
Number of Sequences: 37544
Number of extensions: 238621
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)