Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I20
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40079| Best HMM Match : Ank (HMM E-Value=3.2e-17)                   32   0.32 
SB_47941| Best HMM Match : Ank (HMM E-Value=3.2e-17)                   32   0.32 
SB_41627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)                28   5.3  
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)                25   6.6  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   7.0  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   7.0  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_40079| Best HMM Match : Ank (HMM E-Value=3.2e-17)
          Length = 250

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 292 GWGESCV*LVSEVRDALPLLFDTRRFRRYVATVSYNNIHVIYSLKLSNIVCKAKLLSYV 468
           GWG++ V LV   R+   L    RRFRR+        +H  +S  L N   K + +  V
Sbjct: 22  GWGQTAVYLVVGTREVRSLDEVCRRFRRFRIPAVLPAVHWTFSFHLVNTSLKLRKMDIV 80


>SB_47941| Best HMM Match : Ank (HMM E-Value=3.2e-17)
          Length = 250

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 292 GWGESCV*LVSEVRDALPLLFDTRRFRRYVATVSYNNIHVIYSLKLSNIVCKAKLLSYV 468
           GWG++ V LV   R+   L    RRFRR+        +H  +S  L N   K + +  V
Sbjct: 22  GWGQTAVYLVVGTREVRSLDEVCRRFRRFRIPAVLPAVHWTFSFHLVNTSLKLRKMDIV 80


>SB_41627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 371 LNRRVSNNSGRASRTSLTNHTQLSPHPIALPRGGSDGAFTYKTVHLN 231
           LN+ V+++S +A+ T     T ++PHP  +       A     V +N
Sbjct: 8   LNKTVAHDSDKANITPAMRQTSMTPHPAHISNSSFPSALLKTDVPIN 54


>SB_31271| Best HMM Match : Extensin_2 (HMM E-Value=5.7)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 264 RCIYIQNCTSKLIIIIKQ*NTNTSKRNYLHIY--SNWISNYRXXXXXXXXXXXXTR*YYT 91
           RC++  N TS+    +   NT +   +Y+H Y  ++  ++Y                Y T
Sbjct: 185 RCVHTYNTTSQATRYVHTYNTTSQATHYVHTYNTTSQATHYVHTYNTTSQATRYVHTYNT 244

Query: 90  AKSEAKRYI 64
             S+A RY+
Sbjct: 245 T-SQATRYV 252


>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
          Length = 220

 Score = 24.6 bits (51), Expect(2) = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 LRFDVFVFYCFIIIISLDVQFCM 253
           ++F VF   CF + ++ D  +C+
Sbjct: 1   MKFLVFAIVCFSVALATDATYCL 23



 Score = 21.8 bits (44), Expect(2) = 6.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +2

Query: 275 PLGERWGGGRVACDW 319
           P G +W   +  CDW
Sbjct: 54  PSGLKWSVTKTTCDW 68


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 413 ITCILLYETVATYLLNRRVSNNSGRASRTSLTN 315
           I   +LY  V   L NRR+   SG  +R ++TN
Sbjct: 205 IAMAVLYSIVVYKLWNRRILTGSGAVTRQTVTN 237


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 413 ITCILLYETVATYLLNRRVSNNSGRASRTSLTN 315
           I   +LY  V   L NRR+   SG  +R ++TN
Sbjct: 190 IAMAVLYSIVVYKLWNRRILTGSGAVTRQTVTN 222


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 395 YETVATYLLNRRVSNNSGRASRTSLT 318
           YE V +Y L  RV++ +G  + TSLT
Sbjct: 659 YEAVTSYTLTIRVTDGNGGITETSLT 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,305
Number of Sequences: 59808
Number of extensions: 287692
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)