Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I20
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024804-3|AAF60750.1|  130|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen prot...    27   8.1  

>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 328 VRDALPLLFDTRRFRRYVATV--SYNNIHVIYSLKLSNIVCKAKLL 459
           +R + P+ FD  R++R V TV  S N++ +    ++ N + KA LL
Sbjct: 61  LRSSDPMFFDINRWKREVGTVIRSENHVLIHNDDEIRNAISKAMLL 106


>AC024804-3|AAF60750.1|  130|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.7 protein.
          Length = 130

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 218 IIIISLDVQFCM*MHRLNPPLGERWGGGRVACDWSAKSETLFRCYLI 358
           I+ +SL V  C  ++ L P LG  W    V C   +   + FRC+++
Sbjct: 51  IMPLSLAVLCCF-LNMLIPGLGTFWAALSVLCCSDSGRSSTFRCFMV 96


>Z81492-2|CAB04027.1|  458|Caenorhabditis elegans Hypothetical
           protein E03H4.5 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 ICVLLFYYYYQFRCTVLYVNA 261
           +CVL  YYY Q++  VLY+ A
Sbjct: 163 MCVLPVYYYSQWQNIVLYIEA 183


>AF003151-6|AAK18909.1|  314|Caenorhabditis elegans Collagen protein
           52 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 383 ATYLLNRRVSNNSGRASRTSLTNHTQLSPHPIALPRGGSDGAF 255
           A ++ N  +   SGR+ +  L   T  + HP    R G DG +
Sbjct: 254 AGFIYNTGIIGPSGRSGKNGLNGRTGATGHPGHTGRPGRDGNY 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,292,090
Number of Sequences: 27780
Number of extensions: 209072
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)