Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I20
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family...    30   1.4  
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family...    30   1.4  
At1g63680.1 68414.m07206 Mur ligase family protein contains Pfam...    29   2.5  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    28   5.7  
At2g31040.1 68415.m03786 ATP synthase protein I -related contain...    28   5.7  

>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
           protein
          Length = 438

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 319 PITRNSPPTPSLSQGGVQTVHLHTKLYI*TDNNNKTIKHKYIK-TQLFTYLFKLDI*LPT 143
           P +  SPP  SLSQ    TV    K+Y   DN  + ++    + +QL  Y + LD  +  
Sbjct: 8   PTSSYSPPEDSLSQDITDTVERTMKMY--ADNMMRFLEGLSSRLSQLELYCYNLDKTIGE 65

Query: 142 HARSHTHTHY*HEIILHS 89
                TH H   ++ L S
Sbjct: 66  MRSELTHAHEDADVKLRS 83


>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
           protein
          Length = 496

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 319 PITRNSPPTPSLSQGGVQTVHLHTKLYI*TDNNNKTIKHKYIK-TQLFTYLFKLDI*LPT 143
           P +  SPP  SLSQ    TV    K+Y   DN  + ++    + +QL  Y + LD  +  
Sbjct: 66  PTSSYSPPEDSLSQDITDTVERTMKMY--ADNMMRFLEGLSSRLSQLELYCYNLDKTIGE 123

Query: 142 HARSHTHTHY*HEIILHS 89
                TH H   ++ L S
Sbjct: 124 MRSELTHAHEDADVKLRS 141


>At1g63680.1 68414.m07206 Mur ligase family protein contains Pfam
           profile: PF01225 Mur ligase family, catalytic domain
          Length = 767

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 311 TQLSPHPIALPRGGSDGAFTYKTVHL 234
           T LSPHP+ L   G+  +F+YK V L
Sbjct: 4   TFLSPHPVFLSLTGTTSSFSYKPVLL 29


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 398  LYETVATYLLNRRVSNNSGRASRTSLTNHTQLSPHPIALPRGGSD 264
            LY  + TYLL RR + N    SR  L    Q +   ++   GG +
Sbjct: 3183 LYYWLRTYLLERRDAVNKSELSRVVLAQRMQQNVPGVSAGHGGGN 3227


>At2g31040.1 68415.m03786 ATP synthase protein I -related contains
           weaks similarity to Swiss-Prot:P08443 ATP synthase
           protein I [Synechococcus sp.]
          Length = 350

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 93  TAKSEAKRYITKGVVRTRSPRAPTR 19
           T+KSEAK+ ++K +V  +   APTR
Sbjct: 143 TSKSEAKKQMSKAIVSPKWKLAPTR 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,004
Number of Sequences: 28952
Number of extensions: 186347
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)