Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I19
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   0.75 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   3.0  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    24   7.0  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    24   7.0  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    24   7.0  
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1...    24   7.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   7.0  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
 Frame = +2

Query: 155 SQNVVSSPLSAEYXXXXXXXXXXDPA----HEELLTSLDIPNDDCIRSSFTS-ITSNLKS 319
           S+ V+SSP S +             +    HE+LLT  ++ N   I S FTS + S L +
Sbjct: 102 SRKVISSPYSPKQTHTVLKRLYDRQSVISDHEKLLTPQNVSNSSQILSPFTSLLPSTLST 161

Query: 320 IXGITLNIA 346
           +    L+++
Sbjct: 162 LKDTPLSVS 170


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 277 YSFLIHFNYIQFEVYTRY 330
           ++F+I FNYI+  +Y+R+
Sbjct: 431 HAFIIKFNYIKPSIYSRF 448


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 52  SLPVKSSELTMDAKAISSAVAKFSAKFL*MNLNQKSKCSIFTTFSRIFTCSVDFGYY 222
           SL  K   + +  +AIS A+ K S++   +N NQ+   S    F   F   +D G +
Sbjct: 29  SLGYKVVGIDISERAISKAIDKTSSEKSNVNFNQRD-FSRLNEFKGHFDTVIDIGCF 84


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 55  LPVKSSELTMDAKAISSAVAKFSAK 129
           L +  ++L     A+ SAVAKF AK
Sbjct: 450 LTIPEADLDEGLSAVESAVAKFDAK 474


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 52  SLPVKSSELTMDAKAISSAVAKFSAKFL*MNLNQKSKCSIFTTFSRIFTCSVDFGYY 222
           SL  K   + +  +AIS A+ K S++   +N NQ+   S    F   F   +D G +
Sbjct: 29  SLGYKVVGIDISERAISKAIDKTSSEKSNVNFNQRD-FSRLNEFKGHFDTVIDIGCF 84


>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 52  SLPVKSSELTMDAKAISSAVAKFSAKFL*MNLNQKSKCSIFTTFSRIFTCSVDFGYY 222
           SL  K   + +  +AIS A+ K S++   +N NQ+   S    F   F   +D G +
Sbjct: 29  SLGYKVVGIDISERAISKAIDKTSSEKSNVNFNQRD-FSRLNEFKGHFDTVIDIGCF 84


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +1

Query: 7   VEDIFLLIVTVSLFLSLPVKSS---ELTMDAKAISSAVAKFSAKFL*MNLNQK-SKCSIF 174
           VE    +++T+ +FL +P+ S+   +   ++  + S ++   + F   NL+Q  S  SI 
Sbjct: 2   VEKTSPILITLCIFLLIPISSALPFQTFEESLKLKSNISHTGSFF--ANLSQSYSSTSII 59

Query: 175 TTFSRIFTCSVD 210
            + S    CS+D
Sbjct: 60  HSVSSPVDCSLD 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,584
Number of Sequences: 5004
Number of extensions: 21812
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)