Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I19
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    26   8.7  

>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 281 RSSFTSITSNLKSIXGITLNIAXKVYLKEGPY 376
           ++ F SI   L+   G T      VY+ +GPY
Sbjct: 23  KAGFVSIDCGLEGTSGYTAEDTGIVYVSDGPY 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,757
Number of Sequences: 37544
Number of extensions: 109633
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)