Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I19
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   3.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   3.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.5  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 142 NLNQKSKCSIFTTFSRIFTCSVDFG 216
           NLNQ+    I T    IFT    FG
Sbjct: 25  NLNQEDSNWIITNSFIIFTMQTGFG 49


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 272 DCIRSSFTSITSNLKSI 322
           DC+RS      SN+K I
Sbjct: 173 DCLRSELAQCESNIKVI 189


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 304 IQFEVYTRYYTEHSX*SVLER 366
           +++E+Y +Y   H    VLER
Sbjct: 62  LEYELYIKYSHTHEKKLVLER 82


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 227 PAHEELLTSLDIPND 271
           P+  E  TS+D+P+D
Sbjct: 344 PSETEQSTSMDLPSD 358


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 227 PAHEELLTSLDIPND 271
           P+  E  TS+D+P+D
Sbjct: 344 PSETEQSTSMDLPSD 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,859
Number of Sequences: 438
Number of extensions: 1435
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)