Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I19
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    27   4.2  
At4g21550.1 68417.m03113 transcriptional factor B3 family protei...    27   5.6  
At3g55080.1 68416.m06117 SET domain-containing protein low simil...    26   9.7  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/72 (23%), Positives = 28/72 (38%)
 Frame = +2

Query: 161 NVVSSPLSAEYXXXXXXXXXXDPAHEELLTSLDIPNDDCIRSSFTSITSNLKSIXGITLN 340
           NVV SP+S                 EE+L+ L  P+ D + +    I         + L+
Sbjct: 31  NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTERSDLCLS 90

Query: 341 IAXKVYLKEGPY 376
            A  V++ +  Y
Sbjct: 91  TAHGVWIDKSSY 102


>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
           low similarity to SP|Q01593 Abscisic acid-insensitive
           protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
           protein homolog {Oryza sativa}; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 721

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 227 PAHEELLTSLDIPNDDCIRSSFTSITSN 310
           P   +   S  +P+DD ++SSFTS +S+
Sbjct: 665 PGSNKTTKSETLPHDDTVKSSFTSPSSS 692


>At3g55080.1 68416.m06117 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 463

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 233 HEELLTSLDIPNDDCIRS 286
           H+E+   +D+PNDD +R+
Sbjct: 288 HDEVQIQMDVPNDDPLRN 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,714,940
Number of Sequences: 28952
Number of extensions: 101890
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)