Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I18
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.3  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   10.0 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   10.0 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   10.0 

>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 610 FKKFDTPFMKSSWEPNFGFSL 672
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 527 FINRNDYSLDGKLNLFKSPDTSVD 598
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 488 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVD 598
           +KI ASAT    DFI  N+      +N F S DTS++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLE 149


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 455 TVGGGIDYMFKD-KIGASATAAHTDFIN 535
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 266 AGVALDNVNGHGVSLTDTHIPG 331
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,780
Number of Sequences: 5004
Number of extensions: 53124
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)