Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I18
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   3.4  
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315...    29   3.4  
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197...    29   4.5  
12_02_0412 - 18799217-18801061                                         28   5.9  
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170...    28   5.9  
04_02_0006 + 8455219-8457469,8457560-8457924                           28   7.8  

>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 374 HNDXHDITAKAFATRNMPDIANVPNFNTVGGGIDYMFKDKIG 499
           +ND H   A++    N P +A   N N   G ++Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414


>08_02_1455 +
           27230134-27231110,27231195-27231327,27231417-27231501,
           27233372-27233571
          Length = 464

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/71 (35%), Positives = 32/71 (45%)
 Frame = -2

Query: 333 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSYQQRVL*LXAPEVP 154
           +PG    V  +P P  LSSA  A AA S+  L  S  P A      + Q  L    P++P
Sbjct: 17  SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70

Query: 153 SELSVRAPCAS 121
           S  S  A  +S
Sbjct: 71  SSSSAAAAGSS 81


>02_04_0519 +
           23619084-23619198,23619468-23619559,23619655-23619735,
           23620426-23620501,23620674-23620696
          Length = 128

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 444 GTLAISGIFLVAKAFAVMSWXSLWKRFTLPAAV 346
           G LA+  IF +     ++ W S+W+ FT  A +
Sbjct: 63  GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 475 VYSATDSVEVGYISDIWHISGGESLRCDVV 386
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>11_01_0218 -
           1704459-1704629,1704895-1705119,1705120-1705277,
           1705378-1705463,1705574-1705823,1706220-1707246
          Length = 638

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 456 LSVAE*TICSKIRLVHQRPPLTRTSSIVTITPWTES*TSSRVLTPRSISSRLQEVRYTLH 635
           L +A   +  K RL+HQ   LT   SIVT     +   +S+   P+ I   +    Y +H
Sbjct: 501 LHIAIVQVSCKFRLLHQNASLTAKESIVT----QQLSLNSQAALPQGIVPFVFAKEYNVH 556

Query: 636 EVLLGT*LRILTL 674
             +L T   + T+
Sbjct: 557 PNILSTAYDLFTI 569


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 366 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF 202
           F  P +V+L  N G+C ++ +   P   SS  PA    +  LL+K    I + +F
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALF 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,180
Number of Sequences: 37544
Number of extensions: 384254
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)