Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I18
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   3.4  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 28   6.0  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    28   6.0  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             28   7.9  

>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 332 FGDKVTAAGKVNLFH---NDXHDITAKAFATRNMPDIANVPNFNTV 460
           FGDK   A  +  FH   ND  D +  +  TR + D++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 292 RPRSKSHGYTHPRVRRQGDSC 354
           RP S+SHG  HPRV    D+C
Sbjct: 92  RPTSQSHGNRHPRVPIDKDNC 112


>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2147

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +3

Query: 459  SVAE*TICSKIRLVHQRPPLTRTSSIVTITPWTES*TSSRVLTPRSISSRLQEVRYT 629
            SV + +  S++    Q PP T+ +S+   +P T+  ++++      ++S  QE RY+
Sbjct: 1218 SVTQESRSSQVTSATQEPPSTQATSVTQESPSTQVTSATQESPSSQVTSATQESRYS 1274


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 295 PRSKSHGYTHPRVRRQGDSC 354
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 295 PRSKSHGYTHPRVRRQGDSC 354
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/83 (26%), Positives = 42/83 (50%)
 Frame = -1

Query: 580 TLEEVQLSVQGVIVTIDEVRVSGGR*CTNLIFEHIVYSATDSVEVGYISDIWHISGGESL 401
           T ++V L+ + V +T D+V ++      +L  +    + TD V +   +D++  S G  L
Sbjct: 458 TGDDVHLTSEHVHLTSDDVHLTSDD--VHLTSDD--GNLTDDVHLTS-NDVYLTSDGVHL 512

Query: 400 RCDVVVIVVEEIHFAGSCHLVSE 332
             D V +  +++H  G  HL S+
Sbjct: 513 TSDDVHLTGDDVHLTGDVHLTSD 535


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 307  SHGYTHPRVRRQGDSCRQSESLPQRXPRHHSEGFRHQKYARYR*CTQLQHC 459
            +H  T+PR R Q D C     LP+  P   +       +A Y  C +L HC
Sbjct: 1039 AHYLTYPR-RDQRDHCALPR-LPKTRPLRTTSLTPEATFAHYLTCPRLDHC 1087


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +2

Query: 242 RQKLGAATAGVALDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 382
           R  + + T  +++ + +G+GVSLT +    FG K+ +  K+ + +ND
Sbjct: 443 RTDVTSGTTHLSVVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,495,228
Number of Sequences: 59808
Number of extensions: 424775
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)