Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I17
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 25 5.7
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 5.7
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 7.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 7.5
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 9.9
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 9.9
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 9.9
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 25 9.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 9.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.9
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 9.9
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 5.7
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 160 LNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKT 330
L DD++ G + AK L DNG K+V T G A+ + E V V+ T
Sbjct: 221 LVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGKAIKVINESALEKVIVTNT 277
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 202 YAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTT 333
YAK G+++ LV + E +S + +V+ + ++SKT+
Sbjct: 74 YAKARQKPGVRNHLVSASVAEVVSCGILAPAEVVRQRAQISKTS 117
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 418 DSLLTLPELYFKPATVAELVSYVELVANAAPEITSSLLSHTQ 543
D T E+Y + V Y NAAP +T++ +H Q
Sbjct: 33 DDSTTRTEVYEEGGVEDSAVDYDNASGNAAPRLTAAPNTHAQ 74
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -1
Query: 419 STPTSWQYAARSKTSASGAPPTCT*ICSPVVLDTLTHSVITFFLSDTASDICSPVVPPT 243
+T T+ T+ + APPT + V+ TH T + T + VVPPT
Sbjct: 91 NTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT 149
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 379 VLDLAAYCQDVGVDSLLTLPELY 447
V+ + Y QDV D L +P+LY
Sbjct: 1116 VIVMGVYDQDVNADLSLRIPQLY 1138
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 79 CILWPCVINNNMVVFIARGLMPPVFTPLNDDLSVNY 186
CI ++N VF+++ L P F L DL+ NY
Sbjct: 40 CIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLATNY 75
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 107 LLITHGQSIQKSNKL-CYMNCVDI 39
L++ HG +QK N+L CY C DI
Sbjct: 483 LVMRHGSVLQKENRLGCYF-CNDI 505
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 20 KEIYLLIYLRNSCNTTCL 73
+EI LLI+ RN N TC+
Sbjct: 69 REIKLLIHFRNHRNITCI 86
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 178 VNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVS 324
+ YG I A+F G SVL+ +TG + A D I +W K+S
Sbjct: 928 IAYGDISCIAQFNDYEGHVSVLIATSTGIFLG-AFGDSSD-IRDWKKIS 974
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 286 DRKKVITEWVKVSKTTGLHIQVQVG 360
++KK +++ V +SKT HI +++G
Sbjct: 1130 EKKKELSKQVPISKTNVGHIDIELG 1154
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 10 IIYEGDIPSYISTQFM 57
+IYE ++PSY+S+ F+
Sbjct: 492 MIYEENLPSYLSSNFL 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,789
Number of Sequences: 5004
Number of extensions: 49460
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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