Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I17
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0046 + 10114402-10114535,10116438-10117365                       33   0.12 
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115...    32   0.27 
04_04_0873 - 28905240-28906061                                         32   0.35 
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    29   3.3  
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993...    28   4.4  
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595           28   5.8  

>04_03_0046 + 10114402-10114535,10116438-10117365
          Length = 353

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 32/131 (24%), Positives = 52/131 (39%)
 Frame = +1

Query: 148 VFTPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSK 327
           V TP   D   +  A  S      D G + V+VGGTTGE   ++  +   +I   V    
Sbjct: 60  VKTPYLPDGRFDLEAYDSLINMQIDGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFG 119

Query: 328 TTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAA 507
              + +    G     + +        VG+ + L +   Y K  ++  L+S+ E V    
Sbjct: 120 AK-VKVVGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSIEGLISHFEAVLPMG 177

Query: 508 PEITSSLLSHT 540
           P I  ++ S T
Sbjct: 178 PTIIYNVPSRT 188


>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
            26812145-26813253
          Length = 1188

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
 Frame = +1

Query: 142  PPVFTPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKK----VITE 309
            PP    L+   +V +  +  Y  F+ +  +  VLV    G+  S+ + D  K    V   
Sbjct: 642  PPTSMRLSQVRTVAFFGVLKYMPFVMEFRLIKVLVLHILGDEDSIGIFDLTKISELVRLR 701

Query: 310  WVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSL------LTLPELYFKPATVAE 471
            ++KV+    + +  Q+ G P  + L +     +V  D        LTLP     P+ +  
Sbjct: 702  YLKVTSNVTVKLPTQMQGLPYLETLKIDGTISEVPTDIYLPRLLHLTLPAKTNLPSGIVH 761

Query: 472  LVS-----YVELVANAAPEITS 522
            + S     Y +L  N+A  + S
Sbjct: 762  MTSLRTIGYFDLSCNSAENLWS 783


>04_04_0873 - 28905240-28906061
          Length = 273

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 27/107 (25%), Positives = 46/107 (42%)
 Frame = +1

Query: 220 DNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVLDLAAY 399
           + G + V+VGGTTGE   ++  +   +I   V    T  + +    G     + +     
Sbjct: 4   EGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTK-IKVVGNTGSNSTREAIHATEQ 62

Query: 400 CQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPEITSSLLSHT 540
              VG+ + L +   Y K  +V  L+S+ E V    P I  ++ S T
Sbjct: 63  GFAVGMHAALHINPYYGK-TSVEGLISHFEAVLPMGPTIIYNVPSRT 108


>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +1

Query: 415 VDSLLTLPELYFKPAT----VAELVSYVELVANA 504
           V SL+TLP + F+P T    +AEL+ Y EL+  A
Sbjct: 117 VTSLVTLPVIIFEPMTMLQKMAELMEYCELLDKA 150


>01_05_0722 +
           24598426-24598649,24599113-24599219,24599319-24599374,
           24599469-24599675,24599757-24599963,24600037-24600123,
           24600167-24600208,24600209-24600304,24600406-24600621,
           24600693-24600875,24601014-24601241
          Length = 550

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 220 DNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGAPLADVL 384
           D G+ +  VGG  G H+S    D+  V    +K  K  G     QV  A L  +L
Sbjct: 55  DAGMSAAEVGGVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIIL 109


>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
          Length = 904

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 440 SGSVNNESTPTSWQYAARSKTSASGAPPTCT 348
           S S+N  S  T++ Y + S T  +GAP +CT
Sbjct: 83  SSSIN--SIATAYSYRSMSDTHGTGAPTSCT 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,360
Number of Sequences: 37544
Number of extensions: 339974
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)