Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I17
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)...    29   1.6  
At5g15210.1 68418.m01782 zinc finger homeobox family protein / Z...    29   2.1  
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)...    27   6.4  
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)...    27   6.4  
At3g29590.1 68416.m03718 transferase family protein similar to a...    27   6.4  
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A...    27   6.4  
At4g11910.1 68417.m01894 expressed protein hypothetical protein ...    27   8.4  
At3g09140.1 68416.m01075 expressed protein contains Pfam profile...    27   8.4  
At1g80000.2 68414.m09359 expressed protein identical to unknown ...    27   8.4  
At1g80000.1 68414.m09358 expressed protein identical to unknown ...    27   8.4  

>At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)
           identical to dihydrodipicolinate synthase 2 (DHDPS2)
           [Arabidopsis thaliana] GI:11066382
          Length = 365

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 27/129 (20%), Positives = 51/129 (39%)
 Frame = +1

Query: 154 TPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSDRKKVITEWVKVSKTT 333
           TP   D   +  A          NG + V+VGGTTGE   ++  +   +I   V     +
Sbjct: 74  TPYLPDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGS 133

Query: 334 GLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYFKPATVAELVSYVELVANAAPE 513
            + +    G     + +        VG+ + L +   Y K  ++  L+++ + V +  P 
Sbjct: 134 -IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-TSIEGLIAHFQSVLHMGPT 191

Query: 514 ITSSLLSHT 540
           I  ++   T
Sbjct: 192 IIYNVPGRT 200


>At5g15210.1 68418.m01782 zinc finger homeobox family protein /
           ZF-HD homeobox family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 271

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 241 LVGGTTGEHMSLAVSDRKKVITEWVKVSKTTGLHIQVQVGGA-PLADVLDLAAYCQDVGV 417
           L GG  G + ++ +S RK+  T++ +  K        +VG   P AD + +  +C+++GV
Sbjct: 164 LSGGRGGANTAVPMS-RKRFRTKFSQYQKEKMFEFSERVGWRMPKADDVVVKEFCREIGV 222

Query: 418 D 420
           D
Sbjct: 223 D 223


>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 365

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 154 TPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGE 264
           TP   D   +  A         +NG + V+VGGTTGE
Sbjct: 74  TPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGE 110


>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 364

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 154 TPLNDDLSVNYGAIPSYAKFLADNGIKSVLVGGTTGE 264
           TP   D   +  A         +NG + V+VGGTTGE
Sbjct: 73  TPYLPDGRFDLQAYDDLVNTQIENGAEGVIVGGTTGE 109


>At3g29590.1 68416.m03718 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 449

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 497 LMLHPKLPVLYYHIPSMSR 553
           L LHP   VL+YH+P ++R
Sbjct: 36  LKLHPVDRVLFYHVPELTR 54


>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
           (PP2A) 65 kDa regulatory subunit, putative similar to
           protein phosphatase 2A 65 kDa regulatory subunit
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 302 ITFFLSDTASDICSPVVP-PTRTDLIPLSAK 213
           + + +++   ++C  V P PTRTDL+P  A+
Sbjct: 257 VRYMVANQLYELCEAVGPEPTRTDLVPAYAR 287


>At4g11910.1 68417.m01894 expressed protein hypothetical protein
           F7H19.100 -Arabidopsis thaliana,PID:e1310060
          Length = 466

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 289 RKKVITEWVKVSKTTGLHIQVQVGGAPLADVLDLAA 396
           R +V+ EW KV     LH+   + G     +LDL A
Sbjct: 304 RDEVVAEWRKVKSNMSLHVHCHISGDHF--LLDLIA 337


>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674);
           expression supported by MPSS
          Length = 473

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 298 VITEWVKVSKTTGLHIQVQVGGAPLADVLDLAAYCQDVGVDSLLTLPELYF 450
           +IT+ +KV  ++  ++   + G   AD   L+     VGV  +LTL E +F
Sbjct: 186 IITDDLKVEASSMDNVLNTLRGLGYADTSKLSEILLHVGVSEVLTLLECFF 236


>At1g80000.2 68414.m09359 expressed protein identical to unknown
           protein GB:AAD55481 [Arabidopsis thaliana]
          Length = 605

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 NYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSD 288
           +YG +  + +++ADN  K+++ G  T +  +  + D
Sbjct: 87  DYGQVDDHVEYIADNNDKTIVAGNGTDDSAATDLVD 122


>At1g80000.1 68414.m09358 expressed protein identical to unknown
           protein GB:AAD55481 [Arabidopsis thaliana]
          Length = 605

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 NYGAIPSYAKFLADNGIKSVLVGGTTGEHMSLAVSD 288
           +YG +  + +++ADN  K+++ G  T +  +  + D
Sbjct: 87  DYGQVDDHVEYIADNNDKTIVAGNGTDDSAATDLVD 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,493,854
Number of Sequences: 28952
Number of extensions: 262562
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)