Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I16
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   1.7  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   3.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   6.9  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   9.1  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 116 PPRSSSCK-YFST-SIAKVDFGSSNMGDIDPELKSLS 12
           P  S SCK   ST + ++ DFG + + D+DP  KSL+
Sbjct: 149 PLSSQSCKSQLSTQNYSESDFGWNQLCDLDPIFKSLA 185


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 241 VRRCAAARLYEALTLYGDVCSVPQ 312
           VR+ A + L+   T Y  VC+VPQ
Sbjct: 696 VRKSALSSLWRCATTYYKVCNVPQ 719


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 113 PRSSSCKYFSTSIAKVDFGSSNMGDIDPELKSLSKKL 3
           PRSSS KY+    + +D   S   D++ EL S+ ++L
Sbjct: 252 PRSSSGKYWKQKFSMLDSAHS---DLELELTSIRERL 285


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 67  TFAMDVLKYLQLELRGGKNIYKLLDSINVLCQ 162
           TFA  VLK+ QL+        K+LDS+  + Q
Sbjct: 405 TFAEIVLKHYQLQKLTNPETIKMLDSLTEVAQ 436


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +1

Query: 178 GIVCSKSLGQLVIYLCYADRYVRRCAAARLYEALTLYGDVCSVPQQNID 324
           G +C  SLG             R+C     + +L+ + D C V  QN D
Sbjct: 403 GRICQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNED 451


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 121  NIYKLLDSINVLCQLIQVGGIVCSKSLGQLVIYLCY 228
            N+ K L  ++ LC+ + +G +   +S  Q  +  CY
Sbjct: 1801 NVPKSLRKVDELCRRLSLGIVANKQSASQSSLIFCY 1836


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 313 QNIDQIITVLAEIDWERDVSDLRP 384
           +N+ +I  + AE+ W +   +LRP
Sbjct: 725 ENVSRIYHMAAEVHWMKSYQELRP 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,434
Number of Sequences: 5004
Number of extensions: 48530
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)