Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I16
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722...    30   1.8  
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386     27   9.4  

>06_03_1362 +
           29571324-29571564,29571746-29571921,29571972-29572251,
           29572949-29573085,29573174-29573401
          Length = 353

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 286 YGDVCSVPQQNIDQIITVLAEIDWERDVSDLRPIRNELCDLMNI 417
           YG V  VP++NID+++  L E D +R     R   +E  D+ +I
Sbjct: 276 YGKVSKVPEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSI 319


>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
          Length = 871

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  SLWTY*STCSWNYAGGRIYINS*IQLTFC 157
           + WTY  +C  ++   R Y+N  +  +FC
Sbjct: 302 TFWTYCDSCQMSFQYSREYVNRNLACSFC 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,639
Number of Sequences: 37544
Number of extensions: 299809
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)