Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I14
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    29   0.48 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   5.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.8  

>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 179 GQLSLYSHLSAGPSFLVCTLFNKG--QVQPLCRVKIKKKP 292
           G+  LY HL       VC  +N G   + P+CR K  +KP
Sbjct: 94  GEECLYLHLDPSKQVGVCAWYNMGFCPLGPICRGKHVRKP 133


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 21  DLHDSCFPNHSHLY 62
           DL++ CF N SHLY
Sbjct: 507 DLNNDCFTNTSHLY 520


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 164 YLDHLGQLSLYSHLSAGPSFLVCTLFNKGQVQPLCRVKIKKKPVLIDN 307
           YLD      +  HLS GP  ++  L  + ++   C +  ++  +L D+
Sbjct: 702 YLDAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDS 749


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 173  HLGQLSLYSHLSAGPSFLVCTLFNKGQVQPLCRVKIKKKPVLIDN*IDN 319
            H  +  LYS L  G     C +   G+ +P  R+++   P+L D   DN
Sbjct: 922  HNDERHLYSVLIDGH----CPIMENGKRRPKYRIRLSGNPILGDGKSDN 966


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,293
Number of Sequences: 5004
Number of extensions: 38562
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)