Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I14
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  30   1.5  
SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)                   28   4.7  

>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 210 RGHHS*SVHYLTKDKCSHCAEL 275
           +GHH  S HY +   C+HC+ L
Sbjct: 238 KGHHFVSTHYTSTTFCNHCSNL 259


>SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
          Length = 625

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 296 IQVFFLF*LGTMAALVLC*IMYRLRMMAPPIDENIRKAALGDL 168
           + + FL   GT+  L++  +++ +R M  PI+  +   AL DL
Sbjct: 309 VALIFLLVFGTVCNLIVIALVWTMREMRKPINIMVSSMALSDL 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,261
Number of Sequences: 59808
Number of extensions: 266015
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)