Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I14
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm rec...    28   5.4  
AC024759-8|AAK68431.1|  551|Caenorhabditis elegans Hypothetical ...    28   5.4  
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    27   7.2  

>U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical
           protein C30G12.4 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 358 LLCYFLLFSSVISIVLFCVGVS 423
           LL Y+  FSS+ISIVL CV  S
Sbjct: 116 LLLYYGTFSSIISIVLSCVATS 137


>AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical
           protein H14E04.1 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 72  DMIDTNDYDLENKSH 28
           D+I TNDYD +NK H
Sbjct: 199 DLIKTNDYDKDNKEH 213


>AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm
           receptor protein 204 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = +1

Query: 259 AIVPS*NKKKTCIDRQLNRQQYFAELTQTIMLTLLCYFLLFSSVISIVLFCV 414
           ++VP  +K +   +R+L +Q YFA +TQT++  +L + +  S++     FC+
Sbjct: 233 SLVPHTSKSEK--NRRLQKQLYFALVTQTLIPIVLMH-IPVSTLYFSAFFCI 281


>AC024759-8|AAK68431.1|  551|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.1 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 347 MVWVNSAKYCCRFSCLSIQVFFLF 276
           M+W+  AK  CR   L +Q FF++
Sbjct: 21  MLWLPLAKAICRLQLLPLQFFFIY 44


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 143 TCRDYQSYLDHLGQLSLYSHLSAGPSFLVCTLFNKGQVQPLCRVKIKKKPVL 298
           T RD+    + +  +SL       P+ L+CTL N      +C+++   K V+
Sbjct: 76  TGRDFGIAFNQIDHISLKDEQQENPAVLICTL-NLSSYTKMCKLQTGLKDVV 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,707
Number of Sequences: 27780
Number of extensions: 214565
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)