Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I13
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.6  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   2.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   3.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   5.0  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   5.0  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   8.7  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   8.7  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 415 TKHRYQVKGKHQLLALVEHHDKQLR 489
           T  +YQ + K++L AL+E + KQLR
Sbjct: 842 TSQKYQSELKNELYALLEQYKKQLR 866


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 305 EPSRMDPNSEWLPNSI 352
           EP  +DPNS W PN +
Sbjct: 315 EPEGLDPNSWWYPNGL 330


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 294 ICSIRSCQ*INSRCFLSAFCILYSC 220
           + SIR+C     +CF  AFC +  C
Sbjct: 225 LVSIRTCMLNAKKCFTDAFCEILRC 249


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 593 WS--QSDFGQASPVPVFIKVILI-KYNLYFILIKCSIHYFVIWKL 718
           WS  Q DF    PV   +K  +    N+YF  +K ++H F  +K+
Sbjct: 822 WSTLQRDFTDVDPVRSLMKKTMHGSTNIYFGAVKATLHVFGYFKV 866


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 375 NYNCCPKGIEFGNHSELGSIRDGSRPEICSIRS 277
           +YN  P  + FGNH +LG   D SR E+  I S
Sbjct: 287 DYNV-PFAVNFGNHDDLG---DLSREELAKILS 315


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 283 PFLSINKFALFSICLLYLIFMQVA 212
           P L ++   LF +C+L  IF+Q +
Sbjct: 425 PILWLSSHVLFGVCMLSTIFLQTS 448


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 283 DGTNLRTGTVPNGSQFRMVTEFNT 354
           +G   +T TVP   QF  V EFN+
Sbjct: 68  EGEKTKTETVPTRKQFPKVGEFNS 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,027
Number of Sequences: 5004
Number of extensions: 65760
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)