Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I11
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0259 - 15504541-15504699,15505410-15505795,15506315-15506348     28   6.1  
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     27   8.0  

>11_04_0259 - 15504541-15504699,15505410-15505795,15506315-15506348
          Length = 192

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 120 HPLEEALSAYVFNFIKSVVFMSSY 49
           HPL   LS  + + +K V+FMSSY
Sbjct: 124 HPLVPILSKKIQHEVKEVIFMSSY 147


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 207 IITLLYNMNKIIVTNTHLSIYMNFIMYF 290
           I+  +  M   ++T  HL IYM FI +F
Sbjct: 239 IVRAVMAMVSAVITGNHLEIYMAFIEFF 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,729
Number of Sequences: 37544
Number of extensions: 200734
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)