Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I11
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  29   3.6  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             27   8.2  

>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 74  FIKLNTYADSASSRGCGARFQGYAILHSFYCVLT*LLVQHKLKYD 208
           F+ +    + ++   CG  FQ Y I   F+C +T L +   + +D
Sbjct: 316 FLTVGVLLERSARTVCGDLFQDYVICFCFFCFMTVLTLVVTVNFD 360


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 299  NPLEVHYKIHINRQMSIRYYNF 234
            N + +HYK  +  Q  IRYY+F
Sbjct: 948  NAINLHYKADLEVQEQIRYYDF 969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,620,187
Number of Sequences: 59808
Number of extensions: 265497
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)