Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I11
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    28   4.1  

>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 108 PREGAGRVFKGTQYYILFIVSLHSY*FSIN*STIITLLYNMNKIIVTNTHLSIYMNFIMY 287
           P++     F+ T+Y  L  +S  S   S +      LL+ +  II+ +TH+ I MNFI  
Sbjct: 12  PKKARLNAFQTTEYVNLIAISFCSQ-RSKSIVESAKLLHAIEFIIILSTHIRISMNFINS 70

Query: 288 F 290
           F
Sbjct: 71  F 71


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/51 (29%), Positives = 32/51 (62%)
 Frame = +3

Query: 186 FSIN*STIITLLYNMNKIIVTNTHLSIYMNFIMYF*RILISRGREQFIFPY 338
           F++N +  + +L+++N  I++   LSI ++F + F  ++IS    QF++ Y
Sbjct: 64  FTLNYNRAV-ILFSINDWILSKNFLSIALSFWITFYLLIISLVGVQFVYRY 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,293,790
Number of Sequences: 27780
Number of extensions: 214792
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)