Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I11
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+ antipo...    28   5.1  
At3g29020.1 68416.m03626 myb family transcription factor (MYB110...    28   5.1  
At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2...    28   5.1  
At4g25434.1 68417.m03661 MutT/nudix family protein similar to SP...    27   8.9  

>At5g27150.1 68418.m03240 sodium proton exchanger / Na+/H+
           antiporter (NHX1) identical to Na+/H+ exchanger
           [Arabidopsis thaliana] gi|6650177|gb|AAF21755 and sodium
           proton exchanger Nhx1 [Arabidopsis thaliana]
           gi|4324597|gb|AAD16946; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 538

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 295 GF*SAEVVNSLYFRTRITCYKIAFKKRLTWLTSLISECF**EKKITIFY 441
           G  SA V+  LYF    T  ++A    + +L+ +++E F     +T+F+
Sbjct: 230 GLISAYVIKKLYFGRHSTDREVALMMLMAYLSYMLAELFDLSGILTVFF 278


>At3g29020.1 68416.m03626 myb family transcription factor (MYB110)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 233

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 329 YKLFTTSADQNPLEVHYKIHINRQMSIRYYNFIHVV*KRNNRTLVYAE 186
           +K+F  S   + L +H  I  N  + +RY+ ++ +   RNN  +V+++
Sbjct: 188 HKIFNLSPGLSLLTLHICIEFNSVIVMRYFRYLSL---RNNELMVWSQ 232


>At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2)
           similar to sodium proton exchanger Nhx1 GB:AAD16946
           [Arabidopsis thaliana]; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 546

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 295 GF*SAEVVNSLYFRTRITCYKIAFKKRLTWLTSLISECF**EKKITIFY 441
           G  SA V+  LYF    T  ++A    + +L+ +++E F     +T+F+
Sbjct: 232 GLISAYVIKKLYFGRHSTDREVALMMLMAYLSYMLAELFALSGILTVFF 280


>At4g25434.1 68417.m03661 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 304

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 58  HKNNRFYKIKYICR*RLLERVRGAFSRVRNTTFF 159
           HKN+ F  I +IC  + +E+    FS+   TTFF
Sbjct: 252 HKNDLFKDIHHICSMK-MEKSYSGFSKKPITTFF 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,883
Number of Sequences: 28952
Number of extensions: 181253
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)