Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I10
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    64   2e-12
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    64   2e-12
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    29   0.086
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    23   5.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    23   5.6  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    23   5.6  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   5.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      22   9.8  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    22   9.8  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    22   9.8  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 64.5 bits (150), Expect = 2e-12
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 7   LVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
           L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 106 LITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 64.5 bits (150), Expect = 2e-12
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +1

Query: 7   LVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
           L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 106 LITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.1 bits (62), Expect = 0.086
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 PTVNIISICIVWYRLDLFSLINAIPLG 184
           P V+ +++C+ W ++  FSL+   P G
Sbjct: 434 PEVSAVTLCLFWNKMTRFSLVVGAPFG 460


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 186 TPNGIALIKENKSRRYQTMQIEMILTVGFLVSGTGAWTTEFLGLAT 49
           T + I  + EN+S  Y ++   M+     L  GTG   T+  GL++
Sbjct: 506 TISHITPLPENQSHIYCSIHSGMLQDSQKLYVGTGRLETQITGLSS 551


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 LISFQFASFGIVSICF 158
           L SFQF S  I+S+CF
Sbjct: 258 LQSFQFRSSQILSLCF 273


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 101 NPTVNIISICIVWYRLDLFSLINAIP 178
           +P    +SI   WY L  ++++ AIP
Sbjct: 261 DPLKTPMSIVPEWYLLPFYAILRAIP 286


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -3

Query: 109 GRISGIWHGRLDHRISWARNDEGQ 38
           G++  +W+   +  + W R+ +GQ
Sbjct: 11  GKLKKLWNDTKNDYLEWERSQQGQ 34


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 101 NPTVNIISICIVWYRLDLFS 160
           NP +  I + I WY   L S
Sbjct: 505 NPLIVCIGLAITWYHQQLLS 524


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 69  RWSRRPCQIPEILPLISFQFASF 137
           RW + P QI  I P   F  ASF
Sbjct: 240 RWKQHPDQIEFIPPDGKFTLASF 262


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  PSSLRAQEIRWSRRPCQIPEILPLISFQF 128
           P S R ++   +    +IPE  PL++ QF
Sbjct: 7   PKSKRQKKESLNPTTIEIPEKFPLVNVQF 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,776
Number of Sequences: 5004
Number of extensions: 15353
Number of successful extensions: 45
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)