Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I10
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 72 6e-14
11_01_0155 - 1287003-1287452 72 6e-14
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 28 1.2
01_03_0227 + 13967966-13968559 28 1.2
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 27 2.8
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 26 3.7
04_04_0524 - 25916869-25916876,25917352-25917506,25917712-259178... 26 3.7
07_03_0850 - 22003271-22003516,22004038-22004202,22005065-220051... 26 4.9
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 26 4.9
12_01_0339 + 2603351-2603891,2604048-2604226 25 8.5
09_04_0402 - 17304828-17305622 25 8.5
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 25 8.5
05_05_0123 - 22553400-22554509 25 8.5
03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797... 25 8.5
>12_01_0152 - 1168928-1169377
Length = 149
Score = 72.1 bits (169), Expect = 6e-14
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = +1
Query: 1 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
DI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 113 DIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 72.1 bits (169), Expect = 6e-14
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = +1
Query: 1 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
DI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 113 DIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 20 TEVCWSLTLVVASPRNSVVQAPVPDTRNPTVNIISICIVWYRLDLFSLINAIPLGVF 190
TE+ S L S + ++ P + C+ YR+DLFS+I+ + G F
Sbjct: 504 TEIMVSKNLQTCSDCHEWMKIVSKTDAAPVKTVGQYCLENYRIDLFSIISTVLTGGF 560
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 63 EIRWSRRPCQIPEILPLISF 122
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 151 IETIPNDAN*NDINGRIS-GIWHGRLDHRISWARNDEGQRP 32
+ T ND + +D+ +++ W GR+D W G RP
Sbjct: 465 LSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQGGGRP 505
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 96 VSGTGAWTTEFLGLATTRVSDQQTSV 19
V+G GAW G A T +DQ +S+
Sbjct: 217 VAGAGAWMNNADGSAATMTTDQGSSI 242
>04_04_0524 -
25916869-25916876,25917352-25917506,25917712-25917841,
25918013-25918094,25918180-25918213,25918271-25918327,
25918686-25918791,25920755-25920881
Length = 232
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 56 SPRNSVVQAPVPDTRNPTVNIISICIVWYRL 148
SPR + P N +I+ +C++WY L
Sbjct: 24 SPRQAYASPSPPAPHNSGNDILMLCLLWYIL 54
>07_03_0850 -
22003271-22003516,22004038-22004202,22005065-22005128,
22005785-22006074
Length = 254
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -3
Query: 187 YTQWYRID*RKQ-----IETIPNDAN*NDINGRISGIWHGRLDHRISWARNDEGQR 35
YT ++R RKQ + +A +IN G+WHGR D I N EG +
Sbjct: 158 YTGYFRRRIRKQFNIRFLALNEQEARTLEINNVQCGVWHGRGD-TICLGSNGEGNK 212
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 86 RAPGPPNFLGSQRRGSATSKLL 21
RAPGPP + R G A +K+L
Sbjct: 25 RAPGPPRGPNAPRAGGAPAKVL 46
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 59 PRNSVVQAPVPDTRNPTVNIISICIVW 139
P N + P DTR PT++ I W
Sbjct: 137 PTNEYLCVPTWDTRAPTISQIEFAACW 163
>09_04_0402 - 17304828-17305622
Length = 264
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 27 FAGR*PSSLRAQEIRWSRRPCQI 95
F+ PS+LR Q RW RR Q+
Sbjct: 186 FSAHGPSALREQRERWRRRRGQL 208
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 186 TPNGIALIKENKSRRYQTMQIEMIL 112
TPNG+A+I ++ + M +EM L
Sbjct: 15 TPNGVAVITLDRPKALNAMNLEMDL 39
>05_05_0123 - 22553400-22554509
Length = 369
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 88 HGRLDHRISWARNDEGQRPANFC 20
HG H +W RN GQ +N C
Sbjct: 208 HGGHHHHRAWRRNPFGQMRSNRC 230
>03_02_0871 -
11978725-11978986,11979265-11979422,11979501-11979705,
11979797-11980086,11980539-11980692,11980793-11980881,
11981567-11981634,11982082-11982352
Length = 498
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 21 QKFAGR*PSSLRAQEIRWSRRPCQIPEILPLI 116
QKF+ + P S+ Q I WS + +ILPL+
Sbjct: 170 QKFSRKVPFSM--QPISWSSEKYYLRQILPLV 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,872,779
Number of Sequences: 37544
Number of extensions: 102185
Number of successful extensions: 284
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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