Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I10
         (246 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    66   2e-12
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    27   2.3  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    25   7.1  
AC024826-15|AAF60790.1|  354|Caenorhabditis elegans Hypothetical...    25   9.4  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = +1

Query: 1   DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
           +I   YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 108 NIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 28  LLVADPRRCEPKKFGGPGARARY 96
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 3   HSSSIRQKFAGR*PSSLRAQEIRWSRRPCQIPEILP 110
           H+S +R++     P  L+   +R+  +P QIP + P
Sbjct: 204 HNSPVRRQLVDPLPPLLQPSPVRFPAQPWQIPPLHP 239


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 91  WHGRLDHRISWARNDEGQRPANFCRIELEC 2
           WH + DH +S  + ++ ++PA  CR    C
Sbjct: 190 WHSQ-DHVLSCYKTEQCRKPARLCRQGYAC 218


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 107 TVNIISICIVWYRLDLFSLINAIPLG 184
           TVN+I++  ++YR     LINA  +G
Sbjct: 102 TVNLINLHTLYYRTVCLKLINAQEIG 127


>AC024826-15|AAF60790.1|  354|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.13 protein.
          Length = 354

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 35  SLTLVVASPRNSVVQAPVPDTRNPTVNIISICIVWYR 145
           +LTL V  P + V   P    +N T+ +  + + W R
Sbjct: 170 NLTLTVNLPTSLVAYEPQEQLKNATLTVRDVDLPWAR 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,036,092
Number of Sequences: 27780
Number of extensions: 87107
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)