Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_I10
(246 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 76 4e-15
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 76 4e-15
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 75 9e-15
At1g11480.1 68414.m01319 eukaryotic translation initiation facto... 29 0.33
At5g11570.1 68418.m01349 proton-dependent oligopeptide transport... 27 2.3
At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase, pu... 26 3.0
At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase, pu... 26 3.0
At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase, pu... 26 4.0
At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase, pu... 26 4.0
At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase, pu... 25 7.0
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 25 7.0
At1g80910.1 68414.m09493 expressed protein 25 7.0
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 25 9.2
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 75.8 bits (178), Expect = 4e-15
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +1
Query: 1 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
DILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 110 DILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 75.8 bits (178), Expect = 4e-15
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +1
Query: 1 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
DILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 110 DILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 74.5 bits (175), Expect = 9e-15
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +1
Query: 1 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 111
DIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 110 DILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
>At1g11480.1 68414.m01319 eukaryotic translation initiation
factor-related contains weak similarity to
Swiss-Prot:P23588 eukaryotic translation initiation
factor 4B (eIF-4B) [Homo sapiens]
Length = 578
Score = 29.5 bits (63), Expect = 0.33
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 121 NDINGRISGIWHGRLDHRISWARNDEGQRP 32
N ++G S IW+GR + +S A N+ GQ P
Sbjct: 146 NSVSGNHSNIWNGRKE--VSVANNEPGQSP 173
>At5g11570.1 68418.m01349 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 481
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 53 ASPRNSVVQAPVPDTRNPTVNIISICIVWYRLDLFSLINAIPL 181
ASP Q P ++RNP +C V DL SLIN IP+
Sbjct: 221 ASPYYVRFQKPTRNSRNPW----KLCRVQQVEDLKSLINVIPI 259
>At5g57540.1 68418.m07189 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase (XTR9) GI:4218963 from
[Arabidopsis thaliana]
Length = 284
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 101 NPTVNIISICIVWYRLDLFSLINAIPLGVF 190
+PT + + ++W L++ L++ IP+ VF
Sbjct: 137 DPTADFHTYTVLWNPLNIIFLVDGIPIRVF 166
>At5g57530.1 68418.m07188 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase XTR9 GI:4218963 from
[Arabidopsis thaliana]
Length = 285
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 101 NPTVNIISICIVWYRLDLFSLINAIPLGVF 190
+PT + + ++W L++ L++ IP+ VF
Sbjct: 138 DPTADFHTYTVLWNPLNIIFLVDGIPIRVF 167
>At4g30280.1 68417.m04304 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 101 NPTVNIISICIVWYRLDLFSLINAIPLGVF 190
+PTVN + CI W + ++ IP+ F
Sbjct: 141 DPTVNFHTYCITWNPQRIIFTVDGIPIREF 170
>At1g65310.1 68414.m07406 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 101 NPTVNIISICIVWYRLDLFSLINAIPLGVF 190
+PTVN + CI W + ++ IP+ F
Sbjct: 141 DPTVNFHTYCITWNPQRIIFTVDGIPIREF 170
>At5g48070.1 68418.m05939 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 282
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 101 NPTVNIISICIVWYRLDLFSLINAIPLGVF 190
+PTV+ + CI+W + I+ IP+ F
Sbjct: 141 DPTVDFHTYCIIWNPQRVIFTIDGIPIREF 170
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 118 DINGRISGIWHGRL-DHRISWARNDE 44
DINGRI G W D + ARN++
Sbjct: 58 DINGRIGGTWEINFSDFGVDDARNEK 83
>At1g80910.1 68414.m09493 expressed protein
Length = 497
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 120 MILTVGFLVSGTGAWTTEFLGLATTRVSDQQTSV 19
M LT L SGT +W+ G + ++S + T+V
Sbjct: 234 MRLTTNALSSGTSSWSYLRKGSGSPQISSRSTTV 267
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 89 PDTRNPTVNIISICIVWYR--LDLFSLI 166
P T+NP + I +C+ W LD+F L+
Sbjct: 61 PRTKNPNLCIPILCVSWILTILDIFFLL 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,720,746
Number of Sequences: 28952
Number of extensions: 81252
Number of successful extensions: 230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 60
effective length of database: 10,333,440
effective search space used: 217002240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -