Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_I09
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    26   2.9  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   3.9  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   3.9  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   5.1  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   6.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.0  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   RRRGQTLLHLIRTS*LFILVHKDSRNVPDFDKSD 109
           R RG  +LH    S L +L +KD  ++   DKSD
Sbjct: 87  RTRGLLILHTFTFSCLIVLTNKDKSSIK--DKSD 118


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 234 LLASQPIDLWLSTAITGPVSPRALVV 157
           LL    I +WLS A+ GPV+   L+V
Sbjct: 344 LLIGCAIPIWLSNALKGPVASVELLV 369


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 63  WYIRIRGTCQTLTRAIPAIILLTANNNRVKMSLPR 167
           W +     CQ    A  +I L+  NNNR  + LP+
Sbjct: 237 WLVEFSSVCQ----AAESISLIAVNNNRPPVELPK 267


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 169 GLGSDILTLLLFAVNKMIAGIALVKVWHVP 80
           G+  D++T     VNKM    AL+K +H P
Sbjct: 542 GVNKDLITRPFKNVNKMSVRKALIKPFHPP 571


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 460 SGCYCLKPHSYPV 498
           SGCY LKP SY +
Sbjct: 235 SGCYILKPWSYSI 247


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 323 PNYRRTYTPNQNDGDECEISDID 391
           P   RT  PN NDGD+    + D
Sbjct: 122 PPQNRTAKPNDNDGDDYSFFEDD 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,138
Number of Sequences: 5004
Number of extensions: 41243
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)